View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12751_high_4 (Length: 642)
Name: NF12751_high_4
Description: NF12751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12751_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 5 - 324
Target Start/End: Complemental strand, 43386230 - 43385911
Alignment:
| Q |
5 |
tgttgatcttatcaggtggttttgagaaacaacaaaatatttaatcaaatacttcttctttaaattattaagttaattaaagatgtgctcatatacatgc |
104 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43386230 |
tgttgatcttatcaggtggtgttgagaaacaacaaaatatttaatcaaatacttcttctttaaattattaagttaattaaagatgtgctgatatacatgc |
43386131 |
T |
|
| Q |
105 |
aggaactactacaagtgttcaggtgaaagatgtggtgtgaagaaaagggtggaaagggatagggaagattcaagctatgtgttaacaagctatgaaggtg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43386130 |
aggaactactacaagtgttcaggtgaaagatgtggtgttaagaaaagggtggaaagggatagggaagattcaagctatgtgttaacaagctatgaaggtg |
43386031 |
T |
|
| Q |
205 |
ttcacaatcacgaaagcccctgcaattcatactgcaccccagtgtctttggtgtattccaatgaatggccacagcagaacccttcagcaacctcttcttc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43386030 |
ttcacaatcacgaaagcccctgcaattcatactgcaccccagtgtctttggtgtattccaatgaatggccacagcagaacccttctgcaacctcttcttc |
43385931 |
T |
|
| Q |
305 |
caattaatgctaagttaatc |
324 |
Q |
| |
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|||||||||||||||||||| |
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| T |
43385930 |
caattaatgctaagttaatc |
43385911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 361 - 631
Target Start/End: Complemental strand, 43385864 - 43385594
Alignment:
| Q |
361 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaaca |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43385864 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaaca |
43385765 |
T |
|
| Q |
461 |
tcgtattcgaccattgctaaattcagtactgagtttttaatggcttccaagttccaagtataggtgcatgcgttcatatttttacattttcatctcaaaa |
560 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43385764 |
tcgtattcgaccattgctaaattcggtactgagtttttaatggcttccaagttccaagtataggtgcatgcgttcatatttttacattttcatctcaaaa |
43385665 |
T |
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| Q |
561 |
gtgagatgtataattaaatctcccctcctcattcctcaaaatctaatttgaaatcaattaagaaatgatga |
631 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43385664 |
gtgagatgtataattaaatctcccctcctcattcctcaaaatctaatttgaaatcaattaagaaattatga |
43385594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 4e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 361 - 628
Target Start/End: Complemental strand, 8775288 - 8775029
Alignment:
| Q |
361 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaaca |
460 |
Q |
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|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8775288 |
gctagctgctcttaataaaaggctagaaaggtctgatcgagttggtaagttgtattggctatcttcctgttatctaatcagagttattttctgctaaaca |
8775189 |
T |
|
| Q |
461 |
tcgtattcgaccattgctaaattcagtactgagtttttaatggcttccaagttccaagtata-ggtgcatgcgttcatatttttacattttcatctcaaa |
559 |
Q |
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| |||| | |||||||| |||| ||||||||||||||| ||| |||||| |||| |||||||| |||||| ||| ||||||||||||||||| |
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| T |
8775188 |
ttgtatctgtccattgct--attcggtactgagtttttaaaggc-------ttccaaatatagggtgcatgtgttcatgtttgtacattttcatctcaaa |
8775098 |
T |
|
| Q |
560 |
agtgagatgtataattaaatctcccctcctcattcctcaaaatctaatttgaaatcaattaagaaatga |
628 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
8775097 |
tgtgagatgtataataaaacctcccctcctcattcctcaaaatccaattttaaatcaattaagaaatga |
8775029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 8775388 - 8775319
Alignment:
| Q |
255 |
gtgtattccaatgaatggccacagcagaacccttcagcaacctcttcttccaattaatgctaagttaatc |
324 |
Q |
| |
|
||||||||||| |||||||| | |||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8775388 |
gtgtattccaacgaatggccgctgcagcacccttctgcaacctcttcttccaattaatgctaagttaatc |
8775319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 5e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 361 - 628
Target Start/End: Original strand, 1692084 - 1692343
Alignment:
| Q |
361 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaaca |
460 |
Q |
| |
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|||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1692084 |
gctaactgctcttaataaaaggctagaaaggtctgatcgagttggtaagttgtattggctatcttcctgttatctaatcacagttattttctgctaaaca |
1692183 |
T |
|
| Q |
461 |
tcgtattcgaccattgctaaattcagtactgagtttttaatggcttccaagttccaagtata-ggtgcatgcgttcatatttttacattttcatctcaaa |
559 |
Q |
| |
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| |||| | |||||||| ||| ||||||||||||||| ||| |||||| |||| |||||| | |||||| ||| ||||||||||||||||| |
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| T |
1692184 |
ttgtatctgtccattgct--atttggtactgagtttttaaaggc-------ttccaaatatagggtgcaagtgttcatgtttgtacattttcatctcaaa |
1692274 |
T |
|
| Q |
560 |
agtgagatgtataattaaatctcccctcctcattcctcaaaatctaatttgaaatcaattaagaaatga |
628 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
1692275 |
tgtgagatgtataataaaacctcccctcctcattcctcaaaatccaattttaaatcaattaagaaatga |
1692343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 1691984 - 1692053
Alignment:
| Q |
255 |
gtgtattccaatgaatggccacagcagaacccttcagcaacctcttcttccaattaatgctaagttaatc |
324 |
Q |
| |
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|||||||||||||||||||| | |||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1691984 |
gtgtattccaatgaatggccgctgcagcacccttctgcaacctcttcttccaattaatgctaagttaatc |
1692053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 38399426 - 38399322
Alignment:
| Q |
104 |
caggaactactacaagtgttcaggtgaaagatgtggtgtgaagaaaagggtggaaagggatagggaagattcaagctatgtgttaacaagctatgaaggt |
203 |
Q |
| |
|
||||||||||||||| |||||| ||| ||||| ||||||||||||||||||||||||||| || ||||| ||||||||| ||||||| ||||||||| |
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| T |
38399426 |
caggaactactacaaatgttcaagtgtgggatgtaatgtgaagaaaagggtggaaagggatagagatgattcgagctatgtgataacaagttatgaaggt |
38399327 |
T |
|
| Q |
204 |
gttca |
208 |
Q |
| |
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||||| |
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| T |
38399326 |
gttca |
38399322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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