View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12751_low_10 (Length: 430)
Name: NF12751_low_10
Description: NF12751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12751_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 29 - 418
Target Start/End: Complemental strand, 41444661 - 41444269
Alignment:
| Q |
29 |
aataactattatatcaattatttgtaatggtcaaagagtgattgaaagaaaagctgcatgtaactcttttttcagataaatttttatttgcctcaagtta |
128 |
Q |
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| T |
41444661 |
aataactattatctcaattatttgtaatggtcaaagagtgattgaaagaaaagctgcatgtaactcttttttcagataaatttttatttgcctcaagtta |
41444562 |
T |
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| Q |
129 |
attagtgagag--ttgatgtttttccaaaattgttgaagcctaaagacgctaggagaaaatacttgttactgataaaccaaaagaagcttnnnnnnntgt |
226 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41444561 |
attagtgagagagttgatgtttttccaaaattgttgaagcctaaagacgctaggagaaaatacttgttactgataaaccaaaagaagcttaaaaaaatgt |
41444462 |
T |
|
| Q |
227 |
tgttgttgtgatcatggtccatggagagtcagtgtagtatactttgacttaagcctgctagaaagaagcttaaaactgtttatctctttctccccttatt |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41444461 |
tgttgttgtgatcatggtccatggagagtcagtgtagtatactttgacttaagcctgctagaaagaagcttaaaactgtttatctctttctccccttatt |
41444362 |
T |
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| Q |
327 |
aattcttccatcttcagaactgtatagt-nnnnnnnnntattcctatctctcttttgcaaatctacataattctaccaaaacaaaggcagtga |
418 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41444361 |
aattcttccatcttcagaactgtatagtaaaaaaaaaatattcctatctctcttttgcaaatctacataattctaccaaaacaaaggaagtga |
41444269 |
T |
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