View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12751_low_11 (Length: 414)
Name: NF12751_low_11
Description: NF12751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12751_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 2 - 396
Target Start/End: Complemental strand, 52480187 - 52479793
Alignment:
| Q |
2 |
agttaggtccaacacaaattctaagatggaatcgaagtctattgttccgggacacccaccatttatatccatgcacagagcccaatagtggtgggctgta |
101 |
Q |
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| T |
52480187 |
agttaggtccaacacaaattctaagatggaatcgaagtctattgttccgggacacccaccatttatatccatgcacagagcccaatagtggtgggctgta |
52480088 |
T |
|
| Q |
102 |
ttgggataaatcaagtccggcgttaataaaaagataaggtctgattatagtttataaaacccccaatccaaattttaaaagaaataagcatgaacatggt |
201 |
Q |
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| T |
52480087 |
ttgggataaatcaagtccagcgttaataaaaagataaggtctgattatagtttataaaacccccaatccaaattttaaaagaaataagcatgaacatggt |
52479988 |
T |
|
| Q |
202 |
aatgataatggtaatgggtggttgaaagagaactgataccccagcatcaacatatttggaaccaagcaatggcttcataacatgaagaacaaataattgg |
301 |
Q |
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| T |
52479987 |
aatgataatggtaatgggtggttgaaagagaactgataccccagcatcaacatatttggaaccaagcaatggcttcataacatgaagaacaaataattgg |
52479888 |
T |
|
| Q |
302 |
ctagaaacttcatggtcagaagatgcaatgagttcatcaacatctttccatagaaggcgttcatgagcagtcaaagcagaagggctggtcctaat |
396 |
Q |
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| T |
52479887 |
ctagaaacttcatggtcagaagatgcaatgagttcatcaacatctttccatagaaggcgttcatgagcagtcaaagcagaagggctggtcctaat |
52479793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 22775576 - 22775528
Alignment:
| Q |
49 |
cgggacacccaccatttatatccatgcacagagcccaatagtggtgggc |
97 |
Q |
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| T |
22775576 |
cgggccacccaccatttatatccatgcaccaatcccaatagtgttgggc |
22775528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 7201278 - 7201230
Alignment:
| Q |
237 |
ataccccagcatcaacatatttggaaccaagcaatggcttcataacatg |
285 |
Q |
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| T |
7201278 |
ataccccagcatcaacatatttggaaccaagcaaaggcttcatgacatg |
7201230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 6666577 - 6666535
Alignment:
| Q |
49 |
cgggacacccaccatttatatccatgcacagagcccaatagtg |
91 |
Q |
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| T |
6666577 |
cgggtcacccaccatttatatccatgcaccaagcccaatagtg |
6666535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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