View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12751_low_12 (Length: 332)
Name: NF12751_low_12
Description: NF12751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12751_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 32381313 - 32381612
Alignment:
| Q |
20 |
tttaagaggggtttcggcatccacatgggagacaccgttaagtgcataacggagttttccaccttctctgctaacggtgttaatgagcttaacggtacgg |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32381313 |
tttaagaggggtttcggtatccacatgggagacaccgttaagtgcataacggagttttccaccttctctgctaacggtgttaatgagcttaacggtacgg |
32381412 |
T |
|
| Q |
120 |
gtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaagacc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32381413 |
gtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaagacc |
32381512 |
T |
|
| Q |
220 |
atgcccagcccactggagcttcagggagttcaggtgaagcaggacctttaccgttggcataacgcataatacctttaccggtgataacagtttcagtgaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
32381513 |
atgcccagcccactggagcttcagggagttcaggtgaagcaggacctttaccgttggcataacgcataatacctttaccagtgataacagttttagtgaa |
32381612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 97 - 235
Target Start/End: Original strand, 32387660 - 32387798
Alignment:
| Q |
97 |
tgttaatgagcttaacggtacgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaa |
196 |
Q |
| |
|
|||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
32387660 |
tgttaacgagcttgatggtacgggtgatgttgatctgtccgtaatggtaagaaccttgaggattgggcctagcagcactagcggttaagttccagcggaa |
32387759 |
T |
|
| Q |
197 |
agaacggaactgattcaaagaccatgcccagcccactgg |
235 |
Q |
| |
|
|||||| | ||| ||||||||||| ||||| || ||||| |
|
|
| T |
32387760 |
agaacgaacctggttcaaagaccaagcccaaccaactgg |
32387798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 117 - 292
Target Start/End: Original strand, 37640159 - 37640334
Alignment:
| Q |
117 |
cgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaag |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||| || |||||| |||||| |||||||||||||| || |||||||| || | || |
|
|
| T |
37640159 |
cgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaatgatcggaactggttgagag |
37640258 |
T |
|
| Q |
217 |
accatgcccagcccactggagcttcagggagttcaggtgaagcaggacctttaccgttggcataacgcataatacc |
292 |
Q |
| |
|
|||| ||||| || || || || || || |||||||||| |||||||| ||||||| ||||| |||||||| |
|
|
| T |
37640259 |
accaagcccaaccgacaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgtataatacc |
37640334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 117 - 292
Target Start/End: Original strand, 37648446 - 37648621
Alignment:
| Q |
117 |
cgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaag |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||| || |||||| |||||| |||||||||||||| || |||||||| || | || |
|
|
| T |
37648446 |
cgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaatgatcggaactggttgagag |
37648545 |
T |
|
| Q |
217 |
accatgcccagcccactggagcttcagggagttcaggtgaagcaggacctttaccgttggcataacgcataatacc |
292 |
Q |
| |
|
|||| ||||| || || || || || || |||||||||| |||||||| ||||||| ||||| |||||||| |
|
|
| T |
37648546 |
accaagcccaaccgacaggtgcaggtggtagcacaggtgaagcgggaccttttccgttggtgtaacgtataatacc |
37648621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 37634331 - 37634440
Alignment:
| Q |
117 |
cgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaag |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||| || |||||| |||||| |||||||||||||| || |||||||| || | || |
|
|
| T |
37634331 |
cgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaatgatcggaactggttgagag |
37634430 |
T |
|
| Q |
217 |
accatgccca |
226 |
Q |
| |
|
|||| ||||| |
|
|
| T |
37634431 |
accaagccca |
37634440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 37637245 - 37637354
Alignment:
| Q |
117 |
cgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaag |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||| || |||||| |||||| |||||||||||||| || |||||||| || | || |
|
|
| T |
37637245 |
cgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaatgatcggaactggttgagag |
37637344 |
T |
|
| Q |
217 |
accatgccca |
226 |
Q |
| |
|
|||| ||||| |
|
|
| T |
37637345 |
accaagccca |
37637354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 37645533 - 37645642
Alignment:
| Q |
117 |
cgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaag |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||| || |||||| |||||| |||||||||||||| || |||||||| || | || |
|
|
| T |
37645533 |
cgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaatgatcggaactggttgagag |
37645632 |
T |
|
| Q |
217 |
accatgccca |
226 |
Q |
| |
|
|||| ||||| |
|
|
| T |
37645633 |
accaagccca |
37645642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 37651358 - 37651467
Alignment:
| Q |
117 |
cgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaaagaacggaactgattcaaag |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||| || |||||| |||||| |||||||||||||| || |||||||| || | || |
|
|
| T |
37651358 |
cgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaatgatcggaactggttgagag |
37651457 |
T |
|
| Q |
217 |
accatgccca |
226 |
Q |
| |
|
|||| ||||| |
|
|
| T |
37651458 |
accaagccca |
37651467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University