View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12751_low_14 (Length: 252)
Name: NF12751_low_14
Description: NF12751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12751_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 10805977 - 10806202
Alignment:
| Q |
13 |
tggacatcagtgttttgatatctccatttgtggttctatcggttatattttactggaattttttcactatatcaaggatcacaatgcatccgcgattgtg |
112 |
Q |
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| T |
10805977 |
tggacatcagtgttatgatatctccatttgtggttctatcggttatattttactggaattttttcactatatcaaggatcacaatgcatccgcgattgtg |
10806076 |
T |
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| Q |
113 |
atctaaaactattgagcagtccttgtcttacaagtcgattttgtgggatgaagttaagttatcccttagatccaaaatctaaaatggtatcatagtctat |
212 |
Q |
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| T |
10806077 |
atctaaaactattgagcagtccttgtcttacaagtcgatttt----gatgaagttaagttatccctcagatccaaaatctaaaatggtatcttagtctat |
10806172 |
T |
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| Q |
213 |
cctagatttattattcggtcaagttctctg |
242 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
10806173 |
cctagatttattattcggtcaagttctctg |
10806202 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 46976280 - 46976224
Alignment:
| Q |
185 |
caaaatctaaaatggtatcatagtctatcctagatttattattcggtcaagttctct |
241 |
Q |
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|||| ||||||||||||||| ||||||||||| |||| ||||| ||||||| ||||| |
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| T |
46976280 |
caaactctaaaatggtatcagagtctatcctaaatttgttattaggtcaagatctct |
46976224 |
T |
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