View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12751_low_15 (Length: 247)

Name: NF12751_low_15
Description: NF12751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12751_low_15
NF12751_low_15
[»] chr7 (12 HSPs)
chr7 (13-238)||(17510103-17510328)
chr7 (13-238)||(17542886-17543111)
chr7 (13-238)||(17474619-17474844)
chr7 (13-238)||(17578370-17578595)
chr7 (25-100)||(38788964-38789039)
chr7 (25-107)||(45406686-45406768)
chr7 (20-102)||(43989666-43989748)
chr7 (107-196)||(42078952-42079043)
chr7 (128-207)||(6202346-6202425)
chr7 (133-238)||(4110312-4110417)
chr7 (125-242)||(38788086-38788203)
chr7 (43-106)||(29912589-29912650)
[»] chr8 (13 HSPs)
chr8 (25-238)||(18431511-18431723)
chr8 (125-242)||(15275957-15276074)
chr8 (125-242)||(15456326-15456443)
chr8 (47-103)||(14714616-14714672)
chr8 (125-207)||(43215533-43215615)
chr8 (106-207)||(760675-760776)
chr8 (35-106)||(10901459-10901530)
chr8 (104-159)||(14715283-14715338)
chr8 (104-207)||(45528191-45528294)
chr8 (42-106)||(16313261-16313323)
chr8 (42-106)||(34800828-34800890)
chr8 (50-106)||(17871244-17871300)
chr8 (192-240)||(19263304-19263352)
[»] chr3 (15 HSPs)
chr3 (13-238)||(12125448-12125673)
chr3 (18-105)||(11655403-11655490)
chr3 (125-242)||(9266735-9266852)
chr3 (127-214)||(9265297-9265384)
chr3 (106-183)||(11654666-11654744)
chr3 (20-102)||(20935017-20935099)
chr3 (125-242)||(14240520-14240637)
chr3 (20-100)||(42400405-42400485)
chr3 (42-101)||(32970480-32970539)
chr3 (42-106)||(19817417-19817479)
chr3 (192-240)||(50441-50489)
chr3 (114-214)||(9611705-9611805)
chr3 (20-100)||(32976493-32976573)
chr3 (44-84)||(34849856-34849896)
chr3 (43-107)||(50331974-50332038)
[»] chr4 (15 HSPs)
chr4 (18-106)||(50158170-50158258)
chr4 (25-100)||(28475656-28475731)
chr4 (106-240)||(42756767-42756901)
chr4 (125-214)||(24180650-24180739)
chr4 (43-84)||(48683180-48683221)
chr4 (20-107)||(13228676-13228763)
chr4 (125-242)||(13909809-13909926)
chr4 (41-102)||(24183445-24183506)
chr4 (106-214)||(11560217-11560324)
chr4 (20-103)||(42727943-42728026)
chr4 (42-106)||(26290010-26290072)
chr4 (43-105)||(42757598-42757662)
chr4 (42-106)||(55050042-55050104)
chr4 (107-175)||(285101-285169)
chr4 (25-105)||(11559498-11559578)
[»] chr2 (12 HSPs)
chr2 (47-105)||(29651782-29651840)
chr2 (20-100)||(19040681-19040761)
chr2 (126-197)||(5788087-5788158)
chr2 (31-105)||(36729293-36729367)
chr2 (133-242)||(45058404-45058514)
chr2 (125-207)||(45661121-45661203)
chr2 (20-105)||(5788889-5788974)
chr2 (135-240)||(6466946-6467051)
chr2 (20-100)||(39839110-39839190)
chr2 (20-107)||(3395468-3395555)
chr2 (107-202)||(45275964-45276059)
chr2 (24-62)||(19994500-19994538)
[»] scaffold0191 (3 HSPs)
scaffold0191 (25-102)||(5143-5220)
scaffold0191 (125-202)||(5937-6014)
scaffold0191 (146-242)||(12225-12321)
[»] scaffold0022 (1 HSPs)
scaffold0022 (47-103)||(126581-126637)
[»] scaffold0012 (3 HSPs)
scaffold0012 (42-102)||(96635-96695)
scaffold0012 (104-159)||(95949-96004)
scaffold0012 (42-106)||(31036-31098)
[»] chr5 (6 HSPs)
chr5 (47-103)||(2260826-2260882)
chr5 (19-106)||(9012731-9012818)
chr5 (42-106)||(4062156-4062218)
chr5 (42-106)||(8128445-8128507)
chr5 (41-106)||(38015949-38016014)
chr5 (55-107)||(25545741-25545793)
[»] scaffold1933 (1 HSPs)
scaffold1933 (133-214)||(553-634)
[»] chr6 (10 HSPs)
chr6 (20-100)||(7428507-7428587)
chr6 (114-242)||(34515092-34515221)
chr6 (42-106)||(20874199-20874263)
chr6 (46-105)||(16707317-16707376)
chr6 (50-105)||(31737233-31737288)
chr6 (42-106)||(20872481-20872543)
chr6 (42-106)||(23410101-23410163)
chr6 (48-105)||(24360161-24360218)
chr6 (43-107)||(1599689-1599753)
chr6 (20-100)||(16279102-16279182)
[»] chr1 (11 HSPs)
chr1 (20-100)||(20306755-20306835)
chr1 (20-100)||(40946503-40946583)
chr1 (20-74)||(1992406-1992460)
chr1 (25-101)||(8313411-8313487)
chr1 (20-100)||(30001764-30001844)
chr1 (43-107)||(43387115-43387179)
chr1 (46-84)||(47783156-47783194)
chr1 (42-106)||(17006505-17006567)
chr1 (25-106)||(22636335-22636416)
chr1 (42-106)||(34159524-34159586)
chr1 (20-84)||(49879847-49879911)
[»] scaffold0159 (2 HSPs)
scaffold0159 (126-197)||(32460-32531)
scaffold0159 (20-105)||(33262-33347)
[»] scaffold1345 (1 HSPs)
scaffold1345 (20-102)||(1832-1914)
[»] scaffold1737 (1 HSPs)
scaffold1737 (42-106)||(530-594)
[»] scaffold0216 (1 HSPs)
scaffold0216 (23-103)||(29190-29270)
[»] scaffold1750 (1 HSPs)
scaffold1750 (31-102)||(304-375)
[»] scaffold0169 (1 HSPs)
scaffold0169 (128-207)||(5142-5221)
[»] scaffold0074 (1 HSPs)
scaffold0074 (104-202)||(30837-30934)
[»] scaffold1312 (1 HSPs)
scaffold1312 (125-202)||(10-87)
[»] scaffold0119 (1 HSPs)
scaffold0119 (42-106)||(40592-40654)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 17510328 - 17510103
Alignment:
Q  13 tcactggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgagagagat 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510328 tcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgagagagat 17510229  T
Q  113 attaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggt 212  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17510228 attaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatatcttcaggt 17510129  T
Q  213 ttcggatggagatgtgatgtccatct 238  Q
    |||||||||||||||| |||||||||    
T  17510128 ttcggatggagatgtggtgtccatct 17510103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 17542886 - 17543111
Alignment:
Q  13 tcactggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgagagagat 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17542886 tcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgagagagat 17542985  T
Q  113 attaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggt 212  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17542986 attaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatatcttcaggt 17543085  T
Q  213 ttcggatggagatgtgatgtccatct 238  Q
    |||||||||||||||| |||||||||    
T  17543086 ttcggatggagatgtggtgtccatct 17543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 17474844 - 17474619
Alignment:
Q  13 tcactggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgagagagat 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17474844 tcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgagagagat 17474745  T
Q  113 attaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggt 212  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  17474744 attaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatatcttcaggt 17474645  T
Q  213 ttcggatggagatgtgatgtccatct 238  Q
    |||||||||||||||| |||||||||    
T  17474644 ttcggatggagatgtggtgtccatct 17474619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 17578370 - 17578595
Alignment:
Q  13 tcactggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgagagagat 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17578370 tcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgagagagat 17578469  T
Q  113 attaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggt 212  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  17578470 attaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatatcttcaggt 17578569  T
Q  213 ttcggatggagatgtgatgtccatct 238  Q
    |||||||||||||||| |||||||||    
T  17578570 ttcggatggagatgtggtgtccatct 17578595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 38789039 - 38788964
Alignment:
Q  25 agagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagat 100  Q
    ||||||||||||||| ||||||||||||||||||| || | | ||||||| ||||||||| |||| ||||||||||    
T  38789039 agagtctgacacttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagtagat 38788964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 45406686 - 45406768
Alignment:
Q  25 agagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgaga 107  Q
    ||||||| | ||||| |||||| ||||||||||||||| | ||||||||| ||| |||||| ||||||||| |||||||||||    
T  45406686 agagtctcatacttaatggagaaatgttaatgtgtcaattgtgagttaaaatttgacatttgatgtaagaggagatgttgaga 45406768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 43989666 - 43989748
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgt 102  Q
    ||||||||  |||||||||| | |||||||||||||||||||| | ||||||||| ||| | ||| |||| || |||||||||    
T  43989666 cacaaagatcctgacacttaattgagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatgt 43989748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 42079043 - 42078952
Alignment:
Q  107 agagatattaatgcgtcgtgtgtgatttaaacttcta--cttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatata 196  Q
    |||||| |||||| ||| ||||||| |||||||||||  | ||||||||||||||| ||||||| |||||| |  ||||||||  |||||||    
T  42079043 agagatgttaatgtgtcatgtgtgagttaaacttctatacatttgatgcaagagtagatattgagcaacatgtaagtgagatgatcaatata 42078952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 6202346 - 6202425
Alignment:
Q  128 gtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatctt 207  Q
    |||| |||| ||| ||| ||||||||||||||| ||||| | ||||||||  |||||||| ||||||||| |||| ||||    
T  6202346 gtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtctt 6202425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 4110417 - 4110312
Alignment:
Q  133 ttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggtttcggatggagatgtgatgt 232  Q
    ||||||| |||| ||  |||||| |||||||||||| |||||| |  ||||||||  |||| ||| ||||||||| ||||||  |||||| ||||| |||    
T  4110417 ttaaactactacattgaatgcaatagtatatattgagcaacatgtaagtgagatgatcaatttacataatatcttaaggttttagatggaaatgtggtgt 4110318  T
Q  233 ccatct 238  Q
    | ||||    
T  4110317 caatct 4110312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 38788203 - 38788086
Alignment:
Q  125 tgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggtttcggatggaga 224  Q
    ||||||| |||| ||| ||| ||||| |||| |||| ||||||| ||||||||   ||||||| ||||||||||| || |||| |  ||| | ||| |||    
T  38788203 tgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataactgagatgtccaatatacctgatgtcttaaaattttgaatgaaga 38788104  T
Q  225 tgtgatgtccatctcatt 242  Q
    |||| |||| ||||||||    
T  38788103 tgtggtgtcaatctcatt 38788086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 29912589 - 29912650
Alignment:
Q  43 gagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    |||| ||||||||| ||||| | |||||||||||  ||||||  ||||||||||||||||||||    
T  29912589 gagaaatgttaatgcgtcaagtgtgagttaaagt--cacattggatgtaagagtagatgttgag 29912650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 18431723 - 18431511
Alignment:
Q  25 agagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgagagagatattaatgcgtcg 124  Q
    ||||||| ||||||| |||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| |||| ||||||| |||||| |||     
T  18431723 agagtctaacacttaatggagagatgataatgtgtcaaatatgagttaaa-tttcacattttatgtaagagtagacgttgggagagatgttaatgtgtca 18431625  T
Q  125 tgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggtttcggatggaga 224  Q
    ||||||| ||||||||||| |||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||| |||||||||||  ||| ||||    
T  18431624 tgtgtgagttaaacttctaattttgatgcaagagtatatattgagcaacatatatttgagatgaccaatatacctaatgtcttcaggtttgagatagaga 18431525  T
Q  225 tgtgatgtccatct 238  Q
    |||| |||||||||    
T  18431524 tgtggtgtccatct 18431511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 15276074 - 15275957
Alignment:
Q  125 tgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggtttcggatggaga 224  Q
    ||||||| |||| ||| ||| ||||||| ||||||| |||| || |||| |||  || ||||| |||||||||||||| |||| |||||||| ||| |||    
T  15276074 tgtgtgagttaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggtttcgaatgaaga 15275975  T
Q  225 tgtgatgtccatctcatt 242  Q
    |||| |||| ||||||||    
T  15275974 tgtggtgtcaatctcatt 15275957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 15456443 - 15456326
Alignment:
Q  125 tgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggtttcggatggaga 224  Q
    ||||||| |||| ||| ||| ||||||| ||||||| |||| || |||| |||  || ||||| |||||||||||||| |||| |||||||| ||| |||    
T  15456443 tgtgtgagttaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggtttcgaatgaaga 15456344  T
Q  225 tgtgatgtccatctcatt 242  Q
    |||| |||| ||||||||    
T  15456343 tgtggtgtcaatctcatt 15456326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 14714616 - 14714672
Alignment:
Q  47 gatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgtt 103  Q
    |||||||||||||||| | ||||||||||||||| |||||||||||||||| |||||    
T  14714616 gatgttaatgtgtcaagtgtgagttaaagtttcaaattttatgtaagagtatatgtt 14714672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 43215615 - 43215533
Alignment:
Q  125 tgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatctt 207  Q
    ||||||| |||| ||| ||| ||||||||||||||| ||||| | ||||||||  |||||||| ||||||||| |||| ||||    
T  43215615 tgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtctt 43215533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 760675 - 760776
Alignment:
Q  106 gagagatattaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatc 205  Q
    ||||||| | |||||||| ||| ||| |||||| ||||| |||||||||||| ||||  || ||||||||||| ||||  || | |||||||||||| ||    
T  760675 gagagatgtgaatgcgtcatgtatgagttaaacatctacatttgatgcaagaatatactttaaacaacatatcagtgaagtgactaatatacctaatgtc 760774  T
Q  206 tt 207  Q
    ||    
T  760775 tt 760776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 10901530 - 10901459
Alignment:
Q  35 acttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| ||||||||||||||||| |||||| ||||||||| |  ||||||  ||| || |||||||||||||    
T  10901530 acttaatggagagatgttaatgtatcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgag 10901459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 14715283 - 14715338
Alignment:
Q  104 gagagagatattaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagt 159  Q
    ||||||||| ||||||  || ||||||| |||||||||||| ||||||||||||||    
T  14715283 gagagagatgttaatgtttcatgtgtgagttaaacttctacatttgatgcaagagt 14715338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 45528191 - 45528294
Alignment:
Q  104 gagagagatattaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaata 203  Q
    ||||| ||||||||||  || ||| ||| ||||| ||| || || |||||| ||||||||||||| ||||||||   ||||||| | ||||||||||||     
T  45528191 gagagggatattaatgtatcatgtatgagttaaatttcaacgttggatgcacgagtatatattgagcaacatataaatgagatgacaaatatacctaatg 45528290  T
Q  204 tctt 207  Q
    ||||    
T  45528291 tctt 45528294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 16313323 - 16313261
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| ||||||||||||||| |  ||||||||||  ||||||  ||||||||||||||||||||    
T  16313323 ggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagtagatgttgag 16313261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 34800828 - 34800890
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| ||||||||||||||| |  ||||||||||  ||||||  ||||||||||||||||||||    
T  34800828 ggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagtagatgttgag 34800890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 17871244 - 17871300
Alignment:
Q  50 gttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||||||||||| | ||||||||||||| |||||  ||||||||||| || |||||    
T  17871244 gttaatgtgtcaagtgtgagttaaagttttacattgaatgtaagagtaaatattgag 17871300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 19263352 - 19263304
Alignment:
Q  192 atatacctaatatcttcaggtttcggatggagatgtgatgtccatctca 240  Q
    ||||||||||| |||| |||||| ||||||||||||| |||| ||||||    
T  19263352 atatacctaatgtcttaaggtttaggatggagatgtggtgtcaatctca 19263304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 12125673 - 12125448
Alignment:
Q  13 tcactggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgagagagat 112  Q
    ||||||||| | ||||| |||||| || || ||||||| |||||||||||||  |||||||| ||||||||||||||||| |||||||||||||||||||    
T  12125673 tcactggcagagagagtttgacacctaatgcagagatgataatgtgtcaaatgcgagttaaaatttcacattttatgtaaaagtagatgttgagagagat 12125574  T
Q  113 attaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggt 212  Q
     |||||| ||| |  |||| ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||| ||    
T  12125573 gttaatgtgtcattagtgagttacacttctacttttgatgcaagagtatatattgagcaacatatatgtgagatgaccaatatacctaatgtcttcatgt 12125474  T
Q  213 ttcggatggagatgtgatgtccatct 238  Q
    ||  ||| |||||||| |||| ||||    
T  12125473 ttgagatagagatgtggtgtctatct 12125448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 11655490 - 11655403
Alignment:
Q  18 ggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttga 105  Q
    ||||| |||||||||||||||| |||||||||||||| || |||||| |||||||||||| ||| ||||||||||||||| |||||||    
T  11655490 ggcacgaagagtctgacacttaatggagagatgttaacgtatcaaatgtgagttaaagttccacgttttatgtaagagtaaatgttga 11655403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 242
Target Start/End: Original strand, 9266735 - 9266852
Alignment:
Q  125 tgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggtttcggatggaga 224  Q
    ||||||| |||| ||| ||| ||||||| ||||||| ||||||| |||| |||  || ||||| |||||||||||||| |||| |||||| | ||| | |    
T  9266735 tgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttttgaatgaaaa 9266834  T
Q  225 tgtgatgtccatctcatt 242  Q
    |||| |||| ||||||||    
T  9266835 tgtggtgtcaatctcatt 9266852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 9265297 - 9265384
Alignment:
Q  127 tgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggttt 214  Q
    ||||| |||| ||| ||| ||||||||||||||| ||||| | ||||||||  |||||||| ||||||||| |||| |||| ||||||    
T  9265297 tgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaaggttt 9265384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 11654744 - 11654666
Alignment:
Q  106 gagagatattaatgcgtcgtgtgtgatttaaacttctac-ttttgatgcaagagtatatattgaacaacatatctgtga 183  Q
    |||||||  |||| ||||||||| || ||||| |||||| |||||||||||||||||||||| | |||||||| |||||    
T  11654744 gagagatggtaatacgtcgtgtgagagttaaatttctacattttgatgcaagagtatatattaagcaacatatatgtga 11654666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 20935099 - 20935017
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgt 102  Q
    ||||||||  |||||||||| |||||||||||||||||||||  | ||||||||| ||| | ||| |||| || |||||||||    
T  20935099 cacaaagatcctgacacttaatggagagatgttaatgtgtcaggtgtgagttaaaattttatattgtatgcaatagtagatgt 20935017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 14240637 - 14240520
Alignment:
Q  125 tgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggtttcggatggaga 224  Q
    ||||||| |||| ||| ||| |||||  ||| |||| || |||| |||||||| ||||||||| ||||||||||| |||| || || ||| | ||| |||    
T  14240637 tgtgtgagttaaccttttacatttgacccaaaagtaaattttgagcaacatatatgtgagatgtccaatatacctgatatgttaagattttgaatgaaga 14240538  T
Q  225 tgtgatgtccatctcatt 242  Q
    |||| |||| ||||||||    
T  14240537 tgtggtgtcaatctcatt 14240520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 42400485 - 42400405
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagat 100  Q
    ||||||||  |||||||||| |||||||||||||||||||||  | ||||||||| ||| | ||| |||| || |||||||    
T  42400485 cacaaagatcctgacacttaatggagagatgttaatgtgtcacgtgtgagttaaaattttatattgtatgcaatagtagat 42400405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 32970539 - 32970480
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatg 101  Q
    ||||| |||||||| |||||||| ||||| |||||||||||||  ||| |||||||||||    
T  32970539 ggagatatgttaatatgtcaaatgtgagtgaaagtttcacattagatgcaagagtagatg 32970480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 19817479 - 19817417
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| ||||||||||||||| |  ||||||||||  ||||||  ||||||||||||||||||||    
T  19817479 ggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagtagatgttgag 19817417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 50441 - 50489
Alignment:
Q  192 atatacctaatatcttcaggtttcggatggagatgtgatgtccatctca 240  Q
    ||||||||||| |||| |||||| ||||||||||||| |||| ||||||    
T  50441 atatacctaatgtcttaaggtttgggatggagatgtggtgtcaatctca 50489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 9611805 - 9611705
Alignment:
Q  114 ttaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggtt 213  Q
    |||||| ||| |||||||||||||||||||| || ||||||| |||| || || | ||| || |  |||||||| ||  |||||||||| |||| |||||    
T  9611805 ttaatgtgtcatgtgtgatttaaacttctacgttggatgcaatagtagattttaagcaaaatgttagtgagatgacccgtatacctaatgtcttaaggtt 9611706  T
Q  214 t 214  Q
    |    
T  9611705 t 9611705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 32976573 - 32976493
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagat 100  Q
    ||||||||  || ||||||| ||||||||||||||||| |||| | ||||||||| ||| | ||| |||| || |||||||    
T  32976573 cacaaagatcctaacacttaatggagagatgttaatgtatcaagtgtgagttaaaattttatattgtatgcaatagtagat 32976493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 34849896 - 34849856
Alignment:
Q  44 agagatgttaatgtgtcaaatttgagttaaagtttcacatt 84  Q
    |||||||||||||||||| || ||| |||||||||||||||    
T  34849896 agagatgttaatgtgtcatatgtgaattaaagtttcacatt 34849856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 50332038 - 50331974
Alignment:
Q  43 gagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgaga 107  Q
    |||||||||||||||||||| | ||||||||| |  ||||||  ||| || ||||||||||||||    
T  50332038 gagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgaga 50331974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 50158170 - 50158258
Alignment:
Q  18 ggcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    |||||| ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||    
T  50158170 ggcacagagagtttgacacttaatggagagatgttaatgtgtcaagtatgagttaaagtttcacattttatgcaagagtatatgttgag 50158258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 28475731 - 28475656
Alignment:
Q  25 agagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagat 100  Q
    ||||||||||||||| ||||||||||||||||||| || | | ||||||| ||||||||| |||| ||||||||||    
T  28475731 agagtctgacacttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagtagat 28475656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 42756901 - 42756767
Alignment:
Q  106 gagagatattaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatc 205  Q
    ||||||| |||||| ||| | ||||| | |||||||||| || ||||||||| |||||||||| ||||||||  || | ||| | |||||||||||  ||    
T  42756901 gagagatgttaatgtgtcatttgtgagtaaaacttctacattggatgcaagactatatattgagcaacatataagttaaatgacaaatatacctaaagtc 42756802  T
Q  206 ttcaggtttcggatggagatgtgatgtccatctca 240  Q
    || |||||| ||||| ||||||| |||| ||||||    
T  42756801 ttaaggttttggatgaagatgtggtgtcaatctca 42756767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 24180739 - 24180650
Alignment:
Q  125 tgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggttt 214  Q
    ||||||| |||| ||| ||| ||||||||||||||| ||||| | ||||||||   ||| ||| ||||||||||||||||||| ||||||    
T  24180739 tgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataactgaaatgtccaatatacctaatatcttaaggttt 24180650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 48683180 - 48683221
Alignment:
Q  43 gagagatgttaatgtgtcaaatttgagttaaagtttcacatt 84  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  48683180 gagagatgttaatgtgtcaaatgtgagttaaagtttcacatt 48683221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 13228676 - 13228763
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgaga 107  Q
    |||||| ||||| | ||||| |||||||||||||||||||||| | ||||||||| |  ||||||  ||| || ||||||||||||||    
T  13228676 cacaaaaagtctcatacttaatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgaga 13228763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 242
Target Start/End: Original strand, 13909809 - 13909926
Alignment:
Q  125 tgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggtttcggatggaga 224  Q
    ||||||| |||| ||| ||| ||||| |||| | || ||||||| ||||||||  |||||||| ||||||||||| || |||| || ||| | ||| |||    
T  13909809 tgtgtgagttaaccttttacatttgacgcaaaaataaatattgagcaacatataagtgagatgtccaatatacctgatgtcttaagattttgaatgaaga 13909908  T
Q  225 tgtgatgtccatctcatt 242  Q
    |||| |||| ||||||||    
T  13909909 tgtggtgtcaatctcatt 13909926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 24183506 - 24183445
Alignment:
Q  41 tggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgt 102  Q
    ||||||||||||||||||| || | | ||||||| ||||||||| |||| ||||||||||||    
T  24183506 tggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagtagatgt 24183445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 11560217 - 11560324
Alignment:
Q  106 gagagatattaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatc 205  Q
    ||||||| |||||| ||| || |||| |||||||| ||| || ||||||||||||||||||| |||| ||||  |||||||| | ||||||| | || ||    
T  11560217 gagagatgttaatgtgtcatgggtgagttaaacttatacattggatgcaagagtatatattg-acaatatatacgtgagatgacaaatatacttgatgtc 11560315  T
Q  206 ttcaggttt 214  Q
    || ||||||    
T  11560316 ttaaggttt 11560324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 42728026 - 42727943
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgtt 103  Q
    |||||||||||| ||| |||   |||| ||||||||||||||| | | | ||||||||| |||||| ||| |||||||||||||    
T  42728026 cacaaagagtctcacaattaagtgagatatgttaatgtgtcaattgttacttaaagttttacatttgatgcaagagtagatgtt 42727943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 26290072 - 26290010
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| || |||||||||||| |  ||||||||||  |||||| |||||||||||||||||||||    
T  26290072 ggagaaatattaatgtgtcaagtgcgagttaaagt--cacattgtatgtaagagtagatgttgag 26290010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 42757662 - 42757598
Alignment:
Q  43 gagagatgttaatgtgtcaaatttgagttaaagtttcacatt--ttatgtaagagtagatgttga 105  Q
    |||||||||||||||||||| | ||||| ||||||| |||||   |||| |||||||||||||||    
T  42757662 gagagatgttaatgtgtcaattgtgagtaaaagtttaacattggatatgcaagagtagatgttga 42757598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 55050042 - 55050104
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| ||||||||||||||| |  ||||||||||  ||||||  ||||||||||||||||||||    
T  55050042 ggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagtagatgttgag 55050104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 285101 - 285169
Alignment:
Q  107 agagatattaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacat 175  Q
    |||||| |||||||||| |||| || |||||||||||  || |||||||||||| || || ||||||||    
T  285101 agagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacat 285169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 11559498 - 11559578
Alignment:
Q  25 agagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttga 105  Q
    ||||||||||||||| || |||||||||||| ||| || | ||| ||||| ||| | ||| |||| ||||||| |||||||    
T  11559498 agagtctgacacttattgaagagatgttaatatgtaaagtgtgacttaaaatttgatattgtatgcaagagtaaatgttga 11559578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 29651782 - 29651840
Alignment:
Q  47 gatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttga 105  Q
    |||||||||||||||||| |||||||||||||||||||  ||| |||||||||||||||    
T  29651782 gatgttaatgtgtcaaatgtgagttaaagtttcacattgaatgcaagagtagatgttga 29651840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 19040681 - 19040761
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagat 100  Q
    ||||||||  |||||||||| |||||||||||||||||||||| | ||||||||| ||| | ||| |||| || |||||||    
T  19040681 cacaaagatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat 19040761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 5788158 - 5788087
Alignment:
Q  126 gtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatac 197  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||| ||||||||  |||||||| | |||||||    
T  5788158 gtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaaatatac 5788087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 36729367 - 36729293
Alignment:
Q  31 tgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttga 105  Q
    ||||||||  |||||| |||||||| |||||| | ||||| ||| ||||||||| |||| |||||||||||||||    
T  36729367 tgacactttatggagatatgttaatttgtcaagtgtgagtaaaaatttcacattgtatgcaagagtagatgttga 36729293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 45058514 - 45058404
Alignment:
Q  133 ttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatc-ttcaggtttcggatggagatgtgatg 231  Q
    |||||||||||| || || |||| ||||||||||||  |||||    |||||||||||||||||| |||| || ||||||||| |  || ||||||||||    
T  45058514 ttaaacttctacattggaagcaaaagtatatattgagaaacatgaaagtgagatggccaatatacataatgtctttcaggttttgagtgaagatgtgatg 45058415  T
Q  232 tccatctcatt 242  Q
    || ||||||||    
T  45058414 tcaatctcatt 45058404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 45661121 - 45661203
Alignment:
Q  125 tgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatctt 207  Q
    ||||||| |||| ||| ||| ||||||||||||||| ||||| | ||||||||  |||||||| ||||||||| |||| ||||    
T  45661121 tgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtctt 45661203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 5788974 - 5788889
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttga 105  Q
    |||| ||||||| | ||||| || ||||||||||||||||||||| ||||||||| |  ||||||  ||| || ||||||||||||    
T  5788974 cacagagagtctcatacttaatgaagagatgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatagtagatgttga 5788889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 6466946 - 6467051
Alignment:
Q  135 aaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggtttcggatggagatgtgatgtcc 234  Q
    |||||||||| || ||| |||||||||||||||| ||| ||||   ||| ||| | |||||| ||||| |||| || ||| ||||||||||||| ||||     
T  6466946 aaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgacaaatataactaatgtcttaagtttttggatggagatgtggtgtca 6467045  T
Q  235 atctca 240  Q
    ||||||    
T  6467046 atctca 6467051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 39839190 - 39839110
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagat 100  Q
    ||||||||  ||||||||||  ||||||||||||||||||||| | ||||||||| ||| | ||| |||| || |||||||    
T  39839190 cacaaagatcctgacacttaacggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat 39839110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 3395555 - 3395468
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgaga 107  Q
    |||||||||||| | ||||| |||||||||||||||||||||  | ||||||||| |  ||| ||  ||| || ||||||||||||||    
T  3395555 cacaaagagtctcatacttaatggagagatgttaatgtgtcaggtgtgagttaaaataacactttgaatgcaatagtagatgttgaga 3395468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 45275964 - 45276059
Alignment:
Q  107 agagatattaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaat 202  Q
    ||||||||||||| ||| ||||||| | |||  ||||| ||||||||||||||| | ||| |||||| | |  |||||||| ||||||||| ||||    
T  45275964 agagatattaatgtgtcatgtgtgaataaaatatctacatttgatgcaagagtagacattaaacaacgtgtaagtgagatgaccaatatacttaat 45276059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 19994538 - 19994500
Alignment:
Q  24 aagagtctgacacttactggagagatgttaatgtgtcaa 62  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  19994538 aagagtctgacacttaatggagagatgctaatgtgtcaa 19994500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 5143 - 5220
Alignment:
Q  25 agagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgt 102  Q
    ||||||||||||||| ||||||||||||||||| | || | | ||||||| ||||||||| |||| ||||||||||||    
T  5143 agagtctgacacttaatggagagatgttaatgttttaagtgtaagttaaaatttcacattgtatgcaagagtagatgt 5220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 5937 - 6014
Alignment:
Q  125 tgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaat 202  Q
    ||||||| |||||||||||| ||  | |||| ||||||||||||  |||||   ||||||||||||||||||| ||||    
T  5937 tgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatggccaatatacataat 6014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 242
Target Start/End: Original strand, 12225 - 12321
Alignment:
Q  146 tttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggtttcggatggagatgtgatgtccatctcatt 242  Q
    ||||| |||| |||| ||||||| ||||||||  |||||||| ||||||||||| || |||| || ||| | ||| ||||||| || | ||||||||    
T  12225 tttgacgcaaaagtagatattgagcaacatataagtgagatgtccaatatacctgatgtcttaagattttgaatgaagatgtggtggcaatctcatt 12321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 126581 - 126637
Alignment:
Q  47 gatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgtt 103  Q
    |||||||||||||||| | ||||||||||||||| |||||||||||||||| |||||    
T  126581 gatgttaatgtgtcaagtgtgagttaaagtttcaaattttatgtaagagtatatgtt 126637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 96695 - 96635
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgt 102  Q
    |||| |||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||    
T  96695 ggagtgatgttaatgtgtcaagtgtgagttaaagtttcaaattttatgtaagagtatatgt 96635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 96004 - 95949
Alignment:
Q  104 gagagagatattaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagt 159  Q
    ||||||||| ||||||  || ||||||| |||||||||||| ||||||||||||||    
T  96004 gagagagatgttaatgtttcatgtgtgagttaaacttctacatttgatgcaagagt 95949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 31098 - 31036
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| ||||||||||||||| |  ||||||||||  ||||||  ||||||||||||||||||||    
T  31098 ggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagtagatgttgag 31036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 2260882 - 2260826
Alignment:
Q  47 gatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgtt 103  Q
    |||||||||||||||| | ||||||||||||||| |||||||||||||||| |||||    
T  2260882 gatgttaatgtgtcaagtgtgagttaaagtttcaaattttatgtaagagtatatgtt 2260826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 9012818 - 9012731
Alignment:
Q  19 gcacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    |||| |||||||| ||||||| |||||| || |||||||||||| | | ||||||| ||||||| |  ||  ||||||||||||||||    
T  9012818 gcacgaagagtctcacacttaatggagacatattaatgtgtcaagtgttagttaaaatttcacaatgaattcaagagtagatgttgag 9012731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 4062156 - 4062218
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| ||||||||||||||| |  ||||||||||  ||||||  ||||||||||||||||||||    
T  4062156 ggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagtagatgttgag 4062218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 8128507 - 8128445
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| ||||||||||||||| |  ||||||||||  ||||||  ||||||||||||||||||||    
T  8128507 ggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagtagatgttgag 8128445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 38016014 - 38015949
Alignment:
Q  41 tggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    |||||||||||||||||||||| | ||||||||| |  ||||||  ||| || |||||||||||||    
T  38016014 tggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgag 38015949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 25545793 - 25545741
Alignment:
Q  55 tgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgaga 107  Q
    |||||||| | ||||| ||| ||||||||| ||||||||||||||| ||||||    
T  25545793 tgtgtcaagtgtgagtaaaaatttcacattctatgtaagagtagatattgaga 25545741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1933 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1933
Description:

Target: scaffold1933; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 634 - 553
Alignment:
Q  133 ttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatcttcaggttt 214  Q
    |||||||| ||| || |||||||||||  ||||| ||||||||||  |||||||| || |||||||||||||||| ||||||    
T  634 ttaaacttttacgttggatgcaagagtggatattaaacaacatattagtgagatgacccatatacctaatatcttaaggttt 553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 7428587 - 7428507
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagat 100  Q
    ||||||||  |||||||||| |||||||||||||||||||||| | ||||||||| ||| | ||| |||| || |||||||    
T  7428587 cacaaagatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat 7428507  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 34515221 - 34515092
Alignment:
Q  114 ttaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatc-ttcaggt 212  Q
    |||||| ||| ||||| | |||||||||||| ||  | |||| ||||||||||||  |||||   ||||||||| ||||||||| |||| || |||||||    
T  34515221 ttaatgtgtcatgtgtcagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgaccaatatacataatgtctttcaggt 34515122  T
Q  213 ttcggatggagatgtgatgtccatctcatt 242  Q
    || |  || |||||||||||| ||||||||    
T  34515121 tttgagtgaagatgtgatgtcaatctcatt 34515092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 20874199 - 20874263
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||||||||||||||||||||| |||||||||| || |||||  ||||||   |||||||||||    
T  20874199 ggagagatgttaatgtgtcaaatgtgagttaaagatttacattagatgtaaatatagatgttgag 20874263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 16707317 - 16707376
Alignment:
Q  46 agatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttga 105  Q
    ||||||||||||||||||  |||||| ||||||||||||  | ||||||||| |||||||    
T  16707317 agatgttaatgtgtcaaacgtgagttgaagtttcacattggaagtaagagtaaatgttga 16707376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 31737288 - 31737233
Alignment:
Q  50 gttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttga 105  Q
    ||||||||||||| | ||||||||| |||||||||  ||| |||||||||||||||    
T  31737288 gttaatgtgtcaattgtgagttaaaatttcacattggatgcaagagtagatgttga 31737233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 20872481 - 20872543
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| ||||||| ||||||| | |||||||||||  ||||||  ||||||||||||||||||||    
T  20872481 ggagaaatgttaacgtgtcaagtgtgagttaaagt--cacattggatgtaagagtagatgttgag 20872543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 23410163 - 23410101
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| ||||||||||||||| |  ||||||||||  ||||||  ||||||||||||||||||||    
T  23410163 ggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagtagatgttgag 23410101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 24360218 - 24360161
Alignment:
Q  48 atgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttga 105  Q
    ||||||||||||||| ||||| |||||||| |||| |  ||| |||||||||||||||    
T  24360218 atgttaatgtgtcaattttgacttaaagttccacaatggatgcaagagtagatgttga 24360161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 1599689 - 1599753
Alignment:
Q  43 gagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgaga 107  Q
    |||||||||||||||||||| | ||||||||| |  ||||||  ||| || ||||||||||||||    
T  1599689 gagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgaga 1599753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 16279182 - 16279102
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagat 100  Q
    ||||||||  |||||||||| |||| ||||||||||||||||| | | ||||||| ||| | ||| |||| || |||||||    
T  16279182 cacaaagatcctgacacttaatggacagatgttaatgtgtcaagtgtaagttaaaattttatattgtatgcaatagtagat 16279102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 20306835 - 20306755
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagat 100  Q
    ||||||||  |||||||||| |||||||||||||||||||||| | ||||||||| ||| | ||| |||| || |||||||    
T  20306835 cacaaagatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat 20306755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 40946503 - 40946583
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagat 100  Q
    ||||||||  |||||||||| |||||||||||||||||||||| | ||||||||| ||| | ||| |||| || |||||||    
T  40946503 cacaaagatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat 40946583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 1992406 - 1992460
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaa 74  Q
    ||||||||  |||||||||| |||||||||||||||||||||| | |||||||||    
T  1992406 cacaaagatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaa 1992460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 8313487 - 8313411
Alignment:
Q  25 agagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatg 101  Q
    ||||||||||||||| ||||||||||||||||| | || |   ||||||| ||| ||||| |||| |||||||||||    
T  8313487 agagtctgacacttaatggagagatgttaatgtattaagtgaaagttaaaattttacattgtatgcaagagtagatg 8313411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 30001844 - 30001764
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagat 100  Q
    ||||||||  |||||||||| |||||||||||||||||||||| | | ||||||| ||| | ||| |||| || |||||||    
T  30001844 cacaaagatcctgacacttaatggagagatgttaatgtgtcaagtgtaagttaaaattttatattgtatgcaatagtagat 30001764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 43387179 - 43387115
Alignment:
Q  43 gagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgaga 107  Q
    |||||||||||||||||||| | ||||||||| || ||||||  ||| || ||||||||||||||    
T  43387179 gagagatgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgaga 43387115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 47783156 - 47783194
Alignment:
Q  46 agatgttaatgtgtcaaatttgagttaaagtttcacatt 84  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  47783156 agatgttaatgtgtcaagtgtgagttaaagtttcacatt 47783194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 17006567 - 17006505
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| ||||||||||||||| |  ||||||||||  ||||||  ||||||||||||||||||||    
T  17006567 ggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagtagatgttgag 17006505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 22636416 - 22636335
Alignment:
Q  25 agagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||||| | ||||| ||||||||||||||| | |||| | ||||||||| ||| || ||  ||| ||||||||||||||||    
T  22636416 agagtcttatacttaatggagagatgttaatttttcaagtgtgagttaaaatttgactttgaatgcaagagtagatgttgag 22636335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 34159524 - 34159586
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| ||||||||||||||| |  ||||||||||  ||||||  ||||||||||||||||||||    
T  34159524 ggagaaatgttaatgtgtcaagtgcgagttaaagt--cacattggatgtaagagtagatgttgag 34159586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 49879847 - 49879911
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacatt 84  Q
    |||||||||||| |||||||  | ||| ||||||||||||| | ||||| |||||||| ||||||    
T  49879847 cacaaagagtcttacacttaaggaagatatgttaatgtgtccattttgacttaaagttccacatt 49879911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 32531 - 32460
Alignment:
Q  126 gtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatac 197  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||| ||||||||  |||||||| | |||||||    
T  32531 gtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaaatatac 32460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 33347 - 33262
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttga 105  Q
    |||| ||||||| | ||||| || ||||||||||||||||||||| ||||||||| |  ||||||  ||| || ||||||||||||    
T  33347 cacagagagtctcatacttaatgaagagatgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatagtagatgttga 33262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 1832 - 1914
Alignment:
Q  20 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgt 102  Q
    ||||||||  |||||||||| | |||||||||||||||||||| | ||||||||| ||| | ||| |||| || |||||||||    
T  1832 cacaaagatcctgacacttaattgagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatgt 1914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1737 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1737
Description:

Target: scaffold1737; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 530 - 594
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||||||||||||||||||||| |||||||||| || |||||  ||||||   |||||||||||    
T  530 ggagagatgttaatgtgtcaaatgtgagttaaagatttacattagatgtaaatatagatgttgag 594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 29270 - 29190
Alignment:
Q  23 aaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgtt 103  Q
    ||||||||| ||| |||  ||||| |||||||||| |||||| |||||||||||| ||||||  ||| || ||||||||||    
T  29270 aaagagtctcacagttaagggagatatgttaatgtatcaaatgtgagttaaagttccacattggatgcaaaagtagatgtt 29190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1750 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 375 - 304
Alignment:
Q  31 tgacacttactggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgt 102  Q
    ||||||||| |||||||||||||||||| ||| | ||||||||| ||| | ||| |||| || |||||||||    
T  375 tgacacttaatggagagatgttaatgtggcaagtgtgagttaaaattttatattgtatgcaatagtagatgt 304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 5142 - 5221
Alignment:
Q  128 gtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaatatctt 207  Q
    |||| |||||| ||||| || ||||||||| |||| ||||||||||||||  ||||  || |||||||||||||| ||||    
T  5142 gtgagttaaacatctacattggatgcaagaatatacattgaacaacatataagtgaagtgaccaatatacctaatgtctt 5221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 30837 - 30934
Alignment:
Q  104 gagagagatattaatgcgtcgtgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaat 202  Q
    |||||||||||||||| ||| ||||||| || ||||||||| || | ||| | |||||||||||| ||||||||   ||||||| | |||||| |||||    
T  30837 gagagagatattaatgtgtcatgtgtgagtt-aacttctacattaggtgcgatagtatatattgagcaacatataaatgagatgactaatatatctaat 30934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 10 - 87
Alignment:
Q  125 tgtgtgatttaaacttctacttttgatgcaagagtatatattgaacaacatatctgtgagatggccaatatacctaat 202  Q
    ||||||| |||||||||||| ||  |||||| |||||||||||| ||||||||  | |||| |  |||||||||||||    
T  10 tgtgtgagttaaacttctacattgtatgcaatagtatatattgagcaacatataagcgagaagaacaatatacctaat 87  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 40592 - 40654
Alignment:
Q  42 ggagagatgttaatgtgtcaaatttgagttaaagtttcacattttatgtaagagtagatgttgag 106  Q
    ||||| ||||||| ||||||||| ||||||||||  |||||||  |||||||| |||||||||||    
T  40592 ggagaaatgttaacgtgtcaaatgtgagttaaag--tcacattggatgtaagaatagatgttgag 40654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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