View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12751_low_17 (Length: 232)
Name: NF12751_low_17
Description: NF12751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12751_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 17855858 - 17855661
Alignment:
| Q |
19 |
tgaaggccctggacttggctgtttgactctggtttaatagataagggtggcctcatgcacctttggtagcgcccttgctttaggcgcttgtccttatcct |
118 |
Q |
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| T |
17855858 |
tgaaggccctggacttggctgtttgactctggtttaatagataagggtggcctcatgcacctttggtagcgcccttactttaggcgcttgtccttatcct |
17855759 |
T |
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| Q |
119 |
aagacaagcgtgattattcttgatatggcggtccacaaccccccaagcacgagtcctggttaagggcgaagtggttgaacgagatatgatggtccagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17855758 |
aagacaagcgtgattattcttgatatggcggtccacaaccccccaagcacgagtcctggttaagggcgaagtggttgaacgagatatgatggtccagt |
17855661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 43116493 - 43116449
Alignment:
| Q |
144 |
tggcggtccacaaccccccaagcacgagtcctggttaagggcgaa |
188 |
Q |
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| T |
43116493 |
tggcggtccacaaccccctaaacatgagtcctggttaagggcgaa |
43116449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 47361851 - 47361897
Alignment:
| Q |
148 |
ggtccacaaccccccaagcacgagtcctggttaagggcgaagtggtt |
194 |
Q |
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| T |
47361851 |
ggtccacagccctccaagcacgagtcctggttaagggcgaagtggtt |
47361897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 34647242 - 34647103
Alignment:
| Q |
21 |
aaggccctggacttggctgtttgactctggtttaatagataagggtggcctcatgcacctttggtagcgcccttgctttaggcgct-tgtccttatccta |
119 |
Q |
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||||||||||| | ||||||||||| | |||||| ||||||||| |||||| ||| ||||||| |||||||| |||| | ||| |||||||| |
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| T |
34647242 |
aaggccctggattgagctgtttgactttagtttaagagataagggcggcctcgtgcccctttggcggcgcccttattttatgataagtgtgattatccta |
34647143 |
T |
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| Q |
120 |
agacaagcgtgattattcttgatatggcggtccacaaccc |
159 |
Q |
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||||||| || |||||||||||||||| |||||| ||||| |
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| T |
34647142 |
agacaagtgtaattattcttgatatggaggtccataaccc |
34647103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 11919616 - 11919571
Alignment:
| Q |
149 |
gtccacaaccccccaagcacgagtcctggttaagggcgaagtggtt |
194 |
Q |
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| T |
11919616 |
gtccacaaccccccaagcatgagtcctgaataagggcaaagtggtt |
11919571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 33929555 - 33929455
Alignment:
| Q |
19 |
tgaaggccctggacttggctgtttgactctggtttaatagataagggtggcctcatgcacctttggtagcgcccttgctttaggcgcttgtccttatcct |
118 |
Q |
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|||||||| |||| || || ||| |||| ||||||| ||||||||| ||| | |||||||||||| | || ||| |||||||| ||||| |||||||| |
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| T |
33929555 |
tgaaggccatggatttagcagttcgactttggtttacgagataagggcagccacttgcacctttggttgtgctcttactttaggcacttgttcttatcct |
33929456 |
T |
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| Q |
119 |
a |
119 |
Q |
| |
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| |
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|
| T |
33929455 |
a |
33929455 |
T |
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