View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12751_low_18 (Length: 230)

Name: NF12751_low_18
Description: NF12751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12751_low_18
NF12751_low_18
[»] scaffold1723 (1 HSPs)
scaffold1723 (11-230)||(360-574)
[»] chr2 (12 HSPs)
chr2 (14-195)||(17651218-17651396)
chr2 (114-213)||(41848960-41849060)
chr2 (114-213)||(38783731-38783831)
chr2 (117-214)||(16661301-16661399)
chr2 (20-94)||(44649998-44650072)
chr2 (173-213)||(18724892-18724932)
chr2 (44-100)||(32200878-32200934)
chr2 (45-100)||(9929682-9929737)
chr2 (50-100)||(26576112-26576162)
chr2 (51-100)||(4748142-4748191)
chr2 (56-97)||(38783677-38783718)
chr2 (44-100)||(13037359-13037415)
[»] chr6 (4 HSPs)
chr6 (15-213)||(2602031-2602225)
chr6 (14-195)||(33234881-33235054)
chr6 (114-214)||(6820966-6821067)
chr6 (44-100)||(12843954-12844010)
[»] chr1 (8 HSPs)
chr1 (14-194)||(3387615-3387792)
chr1 (14-213)||(16426373-16426569)
chr1 (20-182)||(3954922-3955081)
chr1 (14-177)||(50127186-50127345)
chr1 (20-100)||(48632614-48632694)
chr1 (114-194)||(23431827-23431908)
chr1 (114-194)||(35677738-35677819)
chr1 (172-213)||(50127494-50127535)
[»] chr8 (14 HSPs)
chr8 (14-194)||(18393576-18393753)
chr8 (20-99)||(2796246-2796325)
chr8 (14-199)||(27401778-27401960)
chr8 (114-213)||(13097386-13097485)
chr8 (20-99)||(2889765-2889844)
chr8 (20-99)||(3145291-3145370)
chr8 (114-212)||(28867230-28867329)
chr8 (20-97)||(2875410-2875487)
chr8 (20-99)||(3159883-3159962)
chr8 (130-205)||(28869800-28869876)
chr8 (114-213)||(15850577-15850677)
chr8 (44-100)||(44502342-44502398)
chr8 (114-213)||(3159781-3159872)
chr8 (45-94)||(37855217-37855266)
[»] scaffold0012 (1 HSPs)
scaffold0012 (14-212)||(209133-209326)
[»] chr7 (14 HSPs)
chr7 (42-190)||(27993866-27994011)
chr7 (145-211)||(9730060-9730126)
chr7 (114-213)||(11820649-11820742)
chr7 (167-206)||(48598252-48598291)
chr7 (114-194)||(37338884-37338965)
chr7 (44-100)||(32716568-32716624)
chr7 (15-82)||(9729902-9729969)
chr7 (59-97)||(48598363-48598401)
chr7 (114-212)||(11809398-11809490)
chr7 (44-94)||(37338818-37338868)
chr7 (64-97)||(11816926-11816959)
chr7 (65-97)||(11809354-11809386)
chr7 (114-165)||(11811035-11811087)
chr7 (44-87)||(25445505-25445549)
[»] chr4 (4 HSPs)
chr4 (114-213)||(32593734-32593834)
chr4 (128-176)||(11064223-11064271)
chr4 (116-183)||(35530034-35530102)
chr4 (44-100)||(40289207-40289263)
[»] chr5 (4 HSPs)
chr5 (114-194)||(4111977-4112058)
chr5 (114-212)||(40837748-40837847)
chr5 (117-213)||(41815735-41815833)
chr5 (44-78)||(41815666-41815700)
[»] chr3 (4 HSPs)
chr3 (114-213)||(11410624-11410724)
chr3 (44-94)||(29697008-29697058)
chr3 (145-194)||(35775618-35775667)
chr3 (145-213)||(27111149-27111217)
[»] scaffold0325 (1 HSPs)
scaffold0325 (113-213)||(12819-12920)
[»] scaffold0018 (1 HSPs)
scaffold0018 (58-94)||(134796-134832)


Alignment Details
Target: scaffold1723 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 360 - 574
Alignment:
Q  11 atggacatcaaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaannnnnnnnnn 110  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  360 atggacatcaaagttgattccaacgtatttcaatttt-cgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaatttttttta- 457  T
Q  111 nngatgaaataatttgctcaagttagatgcatattatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtg 210  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  458 ---atgaaataatttgctcaagttagatgcatattatgtattttgattcttaattaagatcttttataaataaattaatatatagatagcggtgtcggtg 554  T
Q  211 tccatgtcaggtgtccatgt 230  Q
    ||||||||||||||||||||    
T  555 tccatgtcaggtgtccatgt 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 17651396 - 17651218
Alignment:
Q  14 gacatcaaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaannnnnnnnnnnng 113  Q
    ||||| |||||||||| |||||||||| | |||||| |||| ||||||||||||||||| |||||| ||||||| ||||||||||||                 
T  17651396 gacattaaagttgattacaacgtatttaagtttttcaatagtagatggataaataaaggccaaatattattgtaacttgttatagaacttcttgta---- 17651301  T
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatag 195  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| || |||||| ||||||| |||||||||||||||||||||    
T  17651300 atgaaataaattgctcaagttagatgcatatgtatgtattttggtttttaatttagatcttatataaataaattaatatatag 17651218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 41849060 - 41848960
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtc 212  Q
    |||||||||  |||||||||||||| ||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||||||| ||||||||||||    
T  41849060 atgaaataaagtgctcaagttagattcatatgtatgtattttgattctcaatttagatattttataaataaattaatatatagatagcggtgtcggtgtc 41848961  T
Q  213 c 213  Q
    |    
T  41848960 c 41848960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 38783731 - 38783831
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtc 212  Q
    ||||||||| |||| | || |||||| |||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||||  | |||||||||    
T  38783731 atgaaataaattgccctagatagatgtatatgtatgtattttgattctcaattcagatattttataaataaattaatatatagatagcagcgtcggtgtc 38783830  T
Q  213 c 213  Q
    |    
T  38783831 c 38783831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 16661301 - 16661399
Alignment:
Q  117 aaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtcca 214  Q
    |||||| ||||||||||||||| || || |||||||| ||||||| |||| |||||||||||| || ||||||||||||  ||| ||| ||||||||||    
T  16661301 aaataaattgctcaagttagatacacatgtatgtattctgattctcaatttagatcttttatacatgaattaatatatatgtagcggtatcggtgtcca 16661399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 44649998 - 44650072
Alignment:
Q  20 aaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgtt 94  Q
    |||||||||| |||| | ||| | ||||| ||||| ||||| ||||||||||||||||| |||| ||||||||||    
T  44649998 aaagttgattacaacatttttaacttttttgatagtagatgaataaataaaggtcaaattctatggtatcttgtt 44650072  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 18724892 - 18724932
Alignment:
Q  173 tttataaataaattaatatatagatagtggtgtcggtgtcc 213  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  18724892 tttataaataaattaatatataggtagcggtgtcggtgtcc 18724932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 32200878 - 32200934
Alignment:
Q  44 tttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaa 100  Q
    ||||| ||||| ||||| ||||||||||||||||||||||  ||||||||| |||||    
T  32200878 ttttttgatagtagatgaataaataaaggtcaaatactatgatatcttgttgtagaa 32200934  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 9929737 - 9929682
Alignment:
Q  45 ttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaa 100  Q
    |||| ||||| ||||| ||||||||||||||||||||||  ||||||||| |||||    
T  9929737 tttttgatagtagatgaataaataaaggtcaaatactatgatatcttgttgtagaa 9929682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 26576162 - 26576112
Alignment:
Q  50 gatagcagatggataaataaaggtcaaatactattgtatcttgttatagaa 100  Q
    ||||| ||||| ||||||||||||||||||||||  ||||||||| |||||    
T  26576162 gatagtagatgaataaataaaggtcaaatactatgatatcttgttgtagaa 26576112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 4748142 - 4748191
Alignment:
Q  51 atagcagatggataaataaaggtcaaatactattgtatcttgttatagaa 100  Q
    |||| ||||| |||||||||||||||||||||| ||| |||||| |||||    
T  4748142 atagaagatgaataaataaaggtcaaatactatcgtaacttgttttagaa 4748191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 38783677 - 38783718
Alignment:
Q  56 agatggataaataaaggtcaaatactattgtatcttgttata 97  Q
    ||||||||||||||| |||||||| | |||||||||||||||    
T  38783677 agatggataaataaatgtcaaatattgttgtatcttgttata 38783718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 13037415 - 13037359
Alignment:
Q  44 tttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaa 100  Q
    ||||| ||||| ||||| |||||||||| |||||||||||  ||||||||| |||||    
T  13037415 ttttttgatagtagatgaataaataaagatcaaatactatgatatcttgttgtagaa 13037359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 2602225 - 2602031
Alignment:
Q  15 acatcaaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaannnnnnnnnnnnga 114  Q
    |||| |||||||||| ||||  |||| ||||||||||||| | |||||||||||||||  ||||||||||||||||||||||| |              |    
T  2602225 acattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggtaaatactattgtatcttgttatatacctttttcta----a 2602130  T
Q  115 tgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtcc 213  Q
    |||| |||| |||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  2602129 tgaagtaatctgct-aagttagatgcatatgtttgtattttgattcttaatttagatcttttataaataaattaatatataggtagaggtgtcggtgtcc 2602031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 33234881 - 33235054
Alignment:
Q  14 gacatcaaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaannnnnnnnnnnng 113  Q
    ||||| |||||||||| |||| | ||| || |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||                 
T  33234881 gacattaaagttgattacaacat-tttgaaattttcgatagtagatggataaataa-ggtcaaatactattgtatcttgttataaaactttttta----- 33234973  T
Q  114 atgaaataatttgctcaagttagatgcatattatgtattttgattcttaattaagatcttttataaataaattaatatatag 195  Q
    ||||||||| |||||||||||||||||||  |||||||||||||  | |||| |||| ||||||||||||||||||| ||||    
T  33234974 atgaaataaattgctcaagttagatgcat-gtatgtattttgatgataaatttagatattttataaataaattaatacatag 33235054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 6821067 - 6820966
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtc 212  Q
    ||||||||| ||||||||| ||||||||||| ||| |||||||||||| |||| |||| |||||||| ||||||||||||||  ||| | ||||||||||    
T  6821067 atgaaataaattgctcaagatagatgcatatgtatatattttgattctaaatttagattttttataagtaaattaatatataagtagcgatgtcggtgtc 6820968  T
Q  213 ca 214  Q
    ||    
T  6820967 ca 6820966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 12844010 - 12843954
Alignment:
Q  44 tttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaa 100  Q
    ||||| ||||| ||||| ||||||||||||||||||||||  |||||| || |||||    
T  12844010 ttttttgatagtagatgaataaataaaggtcaaatactatgatatcttattgtagaa 12843954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 3387792 - 3387615
Alignment:
Q  14 gacatcaaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaannnnnnnnnnnng 113  Q
    ||||| |||||||||| |||||| ||| ||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||                 
T  3387792 gacattaaagttgattacaacgtttttaaatttttcgatggtagatgaataaataaaggtcaaatactattttatcttgttatagaacttttttta---- 3387697  T
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatata 194  Q
    || |||||| ||| |||||||| |||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||    
T  3387696 ataaaataaattgttcaagttaaatgcatatgtatgtattttgattctcaatttagatattttataaataaattaatatata 3387615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 16426569 - 16426373
Alignment:
Q  14 gacatcaaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaannnnnnnnnnnng 113  Q
    ||||| |||||||||| ||  | |||| |||||||| |||  |||| |||||||||||| ||||||||||||||  |||||||||||                 
T  16426569 gacattaaagttgattacagtgcatttaaatttttcaataatagatagataaataaaggccaaatactattgtaatttgttatagaacttgtttta---- 16426474  T
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtc 212  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| ||| |||||| |||||    
T  16426473 atgaagtaaattgctcaagttagatgcatatgtatgtattttgattcttaatttatatcttttataaataaattaatatataggtagcggtgtcagtgtc 16426374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 3955081 - 3954922
Alignment:
Q  20 aaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaannnnnnnnnnnngatgaaa 119  Q
    |||||||||| |||||| |||   ||||||||||| ||||||||||||||||||||||||| || ||||||| || |||||             ||||||    
T  3955081 aaagttgattacaacgtttttagctttttcgatagtagatggataaataaaggtcaaatacgatcgtatcttattttagaacttttttta----atgaaa 3954986  T
Q  120 taatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaata 182  Q
    ||| |||||||||||||||||| || |||||||| ||||||| ||||  |||||||||||||||    
T  3954985 taaattgctcaagttagatgcacatgtatgtattctgattctcaattttgatcttttataaata 3954922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 50127186 - 50127345
Alignment:
Q  14 gacatcaaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaannnnnnnnnnnng 113  Q
    ||||| |||||||| | || || |||| ||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||||                 
T  50127186 gacattaaagttgaatgcagcgcatttaaatttttcgatagtagatgaa-aaataaaggccaaatactattgtatcttgttatagaactttattta---- 50127280  T
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttat 177  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||||| ||| || |||| ||||||    
T  50127281 atgaaataaattgttcaagttagatgcatatgtatgtattttgattattagtttagatattttat 50127345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 48632614 - 48632694
Alignment:
Q  20 aaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaa 100  Q
    |||||||||| |||||| |||   ||||| ||||| ||| | |||||||||||||||||||||| |||||||||| |||||    
T  48632614 aaagttgattacaacgtttttagcttttttgatagtagaagaataaataaaggtcaaatactatggtatcttgttttagaa 48632694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 23431908 - 23431827
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatata 194  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||| | | || ||| | | |||||||||||||| |||||    
T  23431908 atgaaataacttgctcaagttagatgcttatatatgtattttgattttcattttagaccgtatataaataaattaacatata 23431827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 35677819 - 35677738
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatata 194  Q
    ||||||||| |||||||  |||||| || || ||| |||||||||||| |||| |||| |||||| ||||||||||||||||    
T  35677819 atgaaataaattgctcattttagatacacatgtatatattttgattctcaattcagattttttatgaataaattaatatata 35677738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 50127494 - 50127535
Alignment:
Q  172 ttttataaataaattaatatatagatagtggtgtcggtgtcc 213  Q
    |||||||||||||||||||||||||||| |||| || |||||    
T  50127494 ttttataaataaattaatatatagatagcggtggcgatgtcc 50127535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 18393576 - 18393753
Alignment:
Q  14 gacatcaaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaannnnnnnnnnnng 113  Q
    ||||| |||||||||| |||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| ||                 
T  18393576 gacattaaagttgattacaacgtttttaaattttttgatagtagatggataaataaaggtcaaatactattttatcttgttataaaacttttttta---- 18393671  T
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatata 194  Q
    || |||||| ||| |||||||| |||||||| |||||||| ||||||| |||| |||| |||||||| ||||||||||||||    
T  18393672 ataaaataaattgttcaagttaaatgcatatgtatgtattatgattctcaatttagatattttataagtaaattaatatata 18393753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 2796325 - 2796246
Alignment:
Q  20 aaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttataga 99  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||    
T  2796325 aaagttgattacaacgtatttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttataga 2796246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 27401960 - 27401778
Alignment:
Q  14 gacatcaaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaannnnnnnnnnnng 113  Q
    ||||| |||||||||| |||||| |||   | |||| |||| ||||||||||||||||| ||||| |||||||||||||||||| ||                 
T  27401960 gacattaaagttgattacaacgtttttttttctttcaatagtagatggataaataaaggccaaattctattgtatcttgttatataacttttttta---- 27401865  T
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatag 199  Q
    ||||||||| |||||||||||||||||| || ||| |||||||||||| |||| |||  ||||||||||||||||||||||||||||    
T  27401864 atgaaataaattgctcaagttagatgcagatgtatatattttgattctcaattgagacattttataaataaattaatatatagatag 27401778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 13097485 - 13097386
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtc 212  Q
    ||||||||| |||||  |||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  13097485 atgaaataaattgcttgagttagatgcatatgtatgtattttgattctcaatttagatattttataaataaattaatatat-gatagtggtgtcgctgtc 13097387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 2889765 - 2889844
Alignment:
Q  20 aaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttataga 99  Q
    |||||||| | |||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  2889765 aaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatcttgttataga 2889844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 3145370 - 3145291
Alignment:
Q  20 aaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttataga 99  Q
    |||||||| | |||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  3145370 aaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatcttgttataga 3145291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 28867329 - 28867230
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtc 212  Q
    ||||||||| || || ||||||||||||||| |||||||||||||||| |||| | || ||||||||||||||||||||||||||||| |||| ||||||    
T  28867329 atgaaataaattacttaagttagatgcatatatatgtattttgattctcaatttaaatgttttataaataaattaatatatagatagtagtgttggtgtc 28867230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 2875410 - 2875487
Alignment:
Q  20 aaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttata 97  Q
    |||||||||| |||||| ||| |||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||    
T  2875410 aaagttgattacaacgtgtttaaatttttcaatagtagatggataaataaaggccaaatactattgtatcttgttata 2875487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 3159962 - 3159883
Alignment:
Q  20 aaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttataga 99  Q
    |||||||||| |||||| ||| ||||||||||||  ||||||||||||||||| |||||||||||||| |||||||||||    
T  3159962 aaagttgattacaacgtgtttaaatttttcgatattagatggataaataaaggccaaatactattgtaacttgttataga 3159883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 28869876 - 28869800
Alignment:
Q  130 aagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgt 205  Q
    ||||||||||||||| |||||||||||||||| |||| | || ||||||||||||||||||||||||||||| ||||    
T  28869876 aagttagatgcatatgtatgtattttgattctcaatttaaatattttataaataaattaatatatagatagtagtgt 28869800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 15850577 - 15850677
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtc 212  Q
    |||||||||||||||||| |||||| | ||| |||||||||||||| | | || |||   | |||||||||||||||||||| ||| |||||||||||||    
T  15850577 atgaaataatttgctcaaattagatacttatatatgtattttgattttcattttagactatctataaataaattaatatatacataatggtgtcggtgtc 15850676  T
Q  213 c 213  Q
    |    
T  15850677 c 15850677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 44502398 - 44502342
Alignment:
Q  44 tttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaa 100  Q
    ||||| ||||||||||| |||||||||||||||||| |||  ||||||||| |||||    
T  44502398 ttttttgatagcagatgaataaataaaggtcaaatagtatgatatcttgttgtagaa 44502342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 3159872 - 3159781
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatattatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtcc 213  Q
    ||||||||| ||||||||||||||| ||||||        ||||||| |||| |||||||| |||||||||||| |||| || |||  ||||||||||||    
T  3159872 atgaaataaattgctcaagttagatacatatt--------tgattctcaatttagatctttcataaataaattagtatacaggtagcagtgtcggtgtcc 3159781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 37855266 - 37855217
Alignment:
Q  45 ttttcgatagcagatggataaataaaggtcaaatactattgtatcttgtt 94  Q
    |||| ||||| ||||| |||||||||||| |||||||||| |||||||||    
T  37855266 tttttgatagtagatgaataaataaaggttaaatactattatatcttgtt 37855217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 209326 - 209133
Alignment:
Q  14 gacatcaaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaannnnnnnnnnnng 113  Q
    ||||| |||||| ||| |||||| ||| ||||||||||| | ||||||||||||||||| |||||| | |||||| |||||||||||                 
T  209326 gacattaaagtttattacaacgtttttaaatttttcgattgtagatggataaataaaggccaaatattgttgtattttgttatagaacttttttta---- 209231  T
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtc 212  Q
    ||||||||| |||||  |||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||| ||||  ||||| |||||    
T  209230 atgaaataaattgct--agttagatgcatatgtatgtattttgattctcaatttagatattttataaataaattaatatataaatagcagtgtctgtgtc 209133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 27994011 - 27993866
Alignment:
Q  42 aatttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaannnnnnnnnnnngatgaaataatttgctcaagttagatgca 141  Q
    ||||||||||| | |||||||||||||||| |||| | |||||||||||||||||||||             ||||||||| |||||||||||| |||||    
T  27994011 aatttttcgatggtagatggataaataaagatcaattgctattgtatcttgttatagaactttattta----atgaaataaattgctcaagttaaatgca 27993916  T
Q  142 tat-tatgtattttgattcttaattaagatcttttataaataaattaata 190  Q
    ||| |||||||||||||||||| || | ||||||||||||||||||||||    
T  27993915 tatgtatgtattttgattcttagtttatatcttttataaataaattaata 27993866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 9730060 - 9730126
Alignment:
Q  145 tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgt 211  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||    
T  9730060 tatgtattttggttcttaatttagatcttttataaataaattaatatataggtagcggtgtcagtgt 9730126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 11820649 - 11820742
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtc 212  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| |||  ||||       || |||||||||||||||||||| ||||||||||||||||    
T  11820649 atgaaataaattgctcaagttagatgcatatgtatgtattttgcttcgcaatt-------ttgataaataaattaatatataggtagtggtgtcggtgtc 11820741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 48598291 - 48598252
Alignment:
Q  167 agatcttttataaataaattaatatatagatagtggtgtc 206  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48598291 agatcttttataaataaattaatatatagatagtggtgtc 48598252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 37338884 - 37338965
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatata 194  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||| | |||| |||   | |||||||||||||| |||||    
T  37338884 atgaaataatttgctcaagttagatgcttatatatgtattttgattttcaatttagactgtctataaataaattaacatata 37338965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 32716568 - 32716624
Alignment:
Q  44 tttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaa 100  Q
    |||||||||||  |||| |||||||||| |||||||||||||||||||||| |||||    
T  32716568 tttttcgatagtggatgaataaataaagatcaaatactattgtatcttgttttagaa 32716624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 9729902 - 9729969
Alignment:
Q  15 acatcaaagttgattccaacgtatttcaatttttcgatagcagatggataaataaaggtcaaatacta 82  Q
    |||| |||||||||| ||||| |||| ||||||||||||| || |||||||||||||  |||||||||    
T  9729902 acattaaagttgattacaacgcatttaaatttttcgatagtaggtggataaataaagtccaaatacta 9729969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 48598401 - 48598363
Alignment:
Q  59 tggataaataaaggtcaaatactattgtatcttgttata 97  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  48598401 tggataaataaaggtcaaatactattgtatcgtgttata 48598363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 11809398 - 11809490
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtc 212  Q
    ||||||||| |||||||||||||| |||||| ||||||||||| |||| |||| ||       |||||||||||||||||||| |||  |||||||||||    
T  11809398 atgaaataaattgctcaagttagaagcatatgtatgtattttgcttctaaatttag-------ataaataaattaatatataggtagcagtgtcggtgtc 11809490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 37338818 - 37338868
Alignment:
Q  44 tttttcgatagcagatggataaataaaggtcaaatactattgtatcttgtt 94  Q
    ||||| ||||| ||||| ||||||||||||||||||||||  |||||||||    
T  37338818 ttttttgatagtagatgaataaataaaggtcaaatactatgatatcttgtt 37338868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 11816926 - 11816959
Alignment:
Q  64 aaataaaggtcaaatactattgtatcttgttata 97  Q
    ||||||||||||||||| ||||||||||||||||    
T  11816926 aaataaaggtcaaatacgattgtatcttgttata 11816959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 11809354 - 11809386
Alignment:
Q  65 aataaaggtcaaatactattgtatcttgttata 97  Q
    |||||||| ||||||||||||||||||||||||    
T  11809354 aataaaggccaaatactattgtatcttgttata 11809386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 11811035 - 11811087
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaatt 165  Q
    ||||||||| |||||||||||||| |||||| ||||||||||| |||| ||||    
T  11811035 atgaaataaattgctcaagttagaggcatatgtatgtattttgcttctcaatt 11811087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 25445549 - 25445505
Alignment:
Q  44 tttttcgatagcagatggataaat-aaaggtcaaatactattgta 87  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||||    
T  25445549 tttttcgatagtagatggataaataaaaggccaaatactattgta 25445505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 32593834 - 32593734
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtc 212  Q
    ||||||||| ||||| ||||||||||||||| | ||||||||||||| ||||| ||||| ||||||||||||||| |||| || ||| |||||| |||||    
T  32593834 atgaaataaattgcttaagttagatgcatatgtgtgtattttgattcataatttagatcatttataaataaattagtatacaggtagcggtgtcagtgtc 32593735  T
Q  213 c 213  Q
    |    
T  32593734 c 32593734  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 11064223 - 11064271
Alignment:
Q  128 tcaagttagatgcatattatgtattttgattcttaattaagatctttta 176  Q
    |||| ||||||||| |||||||||||||||||| |||| ||||||||||    
T  11064223 tcaatttagatgcacattatgtattttgattctcaatttagatctttta 11064271  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 35530102 - 35530034
Alignment:
Q  116 gaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataa 183  Q
    ||||||| |||||||| ||||||||| || ||| ||||||||||||  ||| |||||||||||||||||    
T  35530102 gaaataaattgctcaatttagatgcacatgtatatattttgattctcgatttagatcttttataaataa 35530034  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 40289207 - 40289263
Alignment:
Q  44 tttttcgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaa 100  Q
    ||||| ||||| ||||| ||||||||||||||||||||||  ||||||||| |||||    
T  40289207 ttttttgatagtagatgaataaataaaggtcaaatactatgatatcttgttgtagaa 40289263  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 4112058 - 4111977
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatata 194  Q
    ||||||||| | ||||  ||||||||||||| |||||||||||||||| |||| |||||||||||| |||||||||||||||    
T  4112058 atgaaataaatggctccggttagatgcatatgtatgtattttgattctcaatttagatcttttatatataaattaatatata 4111977  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 40837847 - 40837748
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtc 212  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||| | | || ||| | | |||||||||||||| |||||  ||| |||||| |||||    
T  40837847 atgaaataatttgctcaagttagatgcttatatatgtattttgattttcattttagaccgtatataaataaattaacatatatctagcggtgtcagtgtc 40837748  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 41815735 - 41815833
Alignment:
Q  117 aaataatttgctcaagttagatgcatat-tatgtattttg-attcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtcc 213  Q
    ||||||||||||||| ||||||| | || ||||| ||||  ||||| ||||  |||||||||||||||||||||||||||  ||| |||||||||||||    
T  41815735 aaataatttgctcaaattagatgaacatgtatgttttttttattctcaatttggatcttttataaataaattaatatatatgtagcggtgtcggtgtcc 41815833  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 41815666 - 41815700
Alignment:
Q  44 tttttcgatagcagatggataaataaaggtcaaat 78  Q
    ||||||||||| |||||||||||||||||||||||    
T  41815666 tttttcgatagaagatggataaataaaggtcaaat 41815700  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 11410724 - 11410624
Alignment:
Q  114 atgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtc 212  Q
    ||||||||| ||||||||||||||||| ||  |||||||||||||| | | || ||| | | |||||||||||||| |||||  ||| ||||||||||||    
T  11410724 atgaaataacttgctcaagttagatgcttaaatatgtattttgattttcattttagaccgtatataaataaattaacatatatgtagcggtgtcggtgtc 11410625  T
Q  213 c 213  Q
    |    
T  11410624 c 11410624  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 29697058 - 29697008
Alignment:
Q  44 tttttcgatagcagatggataaataaaggtcaaatactattgtatcttgtt 94  Q
    |||| |||||||||||| |||||||||| ||||||| ||||||||||||||    
T  29697058 ttttacgatagcagatgtataaataaagctcaaataatattgtatcttgtt 29697008  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 35775667 - 35775618
Alignment:
Q  145 tatgtattttgattcttaattaagatcttttataaataaattaatatata 194  Q
    ||||||||||||| ||  ||| ||||||||||||||||| ||||||||||    
T  35775667 tatgtattttgatactcgatttagatcttttataaataatttaatatata 35775618  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 27111149 - 27111217
Alignment:
Q  145 tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgtcc 213  Q
    |||||||||||||| | | || ||| | |||||||||||||||| |||||  || ||||||||||||||    
T  27111149 tatgtattttgattttcattttagaccgtttataaataaattaacatatatgtaatggtgtcggtgtcc 27111217  T

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Target: scaffold0325 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 12920 - 12819
Alignment:
Q  113 gatgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagtggtgtcggtgt 211  Q
    |||||||||| |||||||||||| || | ||| | |||||||||||| | | || ||  ||| | ||||||||||||||||||  ||| |||||||||||    
T  12920 gatgaaataaattgctcaagttaaattcttatgtttgtattttgattttcattttaggccttctgtaaataaattaatatatatgtagcggtgtcggtgt 12821  T
Q  212 cc 213  Q
    ||    
T  12820 cc 12819  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 134796 - 134832
Alignment:
Q  58 atggataaataaaggtcaaatactattgtatcttgtt 94  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  134796 atggatatataaaggtcaaatactattgtattttgtt 134832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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