View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12751_low_19 (Length: 224)

Name: NF12751_low_19
Description: NF12751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12751_low_19
NF12751_low_19
[»] chr4 (3 HSPs)
chr4 (89-221)||(1917815-1917943)
chr4 (142-223)||(1871841-1871922)
chr4 (10-70)||(53650995-53651051)
[»] chr7 (4 HSPs)
chr7 (139-202)||(17490931-17490994)
chr7 (139-202)||(17562220-17562283)
chr7 (10-114)||(17490821-17490930)
chr7 (10-114)||(17562284-17562393)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 1917815 - 1917943
Alignment:
Q  89 aagaagctagtaaaacatatgcaagggaatcaaaccataatttaactaaatatatttaatttaattacgaaccttctttaagcccataacgtctgaaagt 188  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1917815 aagaagctagtaagacatatgcaaggaaatcaaaccataatttaacta----tatttaatttaattacgaaccttctttaagcccataacgtctgaaagt 1917910  T
Q  189 tccttcaacatctctgtgatgtccatctcattg 221  Q
    |||||||||||||||||||| ||| ||||||||    
T  1917911 tccttcaacatctctgtgatctccttctcattg 1917943  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 1871841 - 1871922
Alignment:
Q  142 atttaatttaattacgaaccttctttaagcccataacgtctgaaagttccttcaacatctctgtgatgtccatctcattgct 223  Q
    ||||||||||||||| ||||||||||||||| || || ||||||||||| |||||  ||| ||| || ||| ||||||||||    
T  1871841 atttaatttaattaccaaccttctttaagcctatgacatctgaaagttctttcaatctctgtgttatctccttctcattgct 1871922  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 53651051 - 53650995
Alignment:
Q  10 gagtagcaaagaatgaatgcgtgaaagtaagtaattgagtgagatttcattagatgattga 70  Q
    |||| ||| |||||||||||||||||||||    ||||||||||||| |||||||||||||    
T  53651051 gagtcgcagagaatgaatgcgtgaaagtaa----ttgagtgagatttaattagatgattga 53650995  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 17490931 - 17490994
Alignment:
Q  139 tatatttaatttaattacgaaccttctttaagcccataacgtctgaaagttccttcaacatctc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17490931 tatatttaatttaattacgaaccttctttaagcccataacgtctgaaagttccttcaacatctc 17490994  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 17562283 - 17562220
Alignment:
Q  139 tatatttaatttaattacgaaccttctttaagcccataacgtctgaaagttccttcaacatctc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17562283 tatatttaatttaattacgaaccttctttaagcccataacgtctgaaagttccttcaacatctc 17562220  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 17490821 - 17490930
Alignment:
Q  10 gagtagcaaagaatgaatgcgtgaaagtaagtaattgagtgagatttcattagatgattga---------atttttaatctcagccttaagaagctagta 100  Q
    |||| ||| |||||||||||||||||||||    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  17490821 gagttgcagagaatgaatgcgtgaaagtaa----ttgagtgagatttcattagatgattgacacaaggtaatttttaatctcagccttaagaagctagta 17490916  T
Q  101 aaacatatgcaagg 114  Q
    | ||||||||||||    
T  17490917 agacatatgcaagg 17490930  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 17562393 - 17562284
Alignment:
Q  10 gagtagcaaagaatgaatgcgtgaaagtaagtaattgagtgagatttcattagatgattga---------atttttaatctcagccttaagaagctagta 100  Q
    |||| ||| |||||||||||||||||||||    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  17562393 gagttgcagagaatgaatgcgtgaaagtaa----ttgagtgagatttcattagatgattgacacaaggtaatttttaatctcagccttaagaagctagta 17562298  T
Q  101 aaacatatgcaagg 114  Q
    | ||||||||||||    
T  17562297 agacatatgcaagg 17562284  T

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