View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12751_low_2 (Length: 814)
Name: NF12751_low_2
Description: NF12751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12751_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 762; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 15 - 796
Target Start/End: Original strand, 39982318 - 39983099
Alignment:
| Q |
15 |
agagactacaaggggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagat |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982318 |
agagactacaaggggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagat |
39982417 |
T |
|
| Q |
115 |
accaagtacttcttccaggataactggcgaagatcctgggtatttgctctgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatata |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39982418 |
accaagtacttcttccaggataactggcgaagatcctgggtatttgctctgtggattggtgtcatgttaggcctatttgcctttaaatttgtgcaatata |
39982517 |
T |
|
| Q |
215 |
ggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982518 |
ggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgt |
39982617 |
T |
|
| Q |
315 |
ttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatggcctcaattttcacaaggtaatttttgcttct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39982618 |
ttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatggcctcaattttcacaaggtaatttttgcttct |
39982717 |
T |
|
| Q |
415 |
gctttttccatcaagagtgacaagataattaaatactagtacacactaatacgcatatgcattagtcatgtttgtaggattatagcaggtttcacaaggc |
514 |
Q |
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|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39982718 |
gctttttccatcaagagtgtcaagataactaaatactagtacacactaatacgcatatgcattagtcatgtttgtaggattatagcagctttcacaaggc |
39982817 |
T |
|
| Q |
515 |
ataaaattatgagtatttttgcagatgatagctctggcaatagcaattggtgttggtatacatgctatttatcatcttgcttgtgattttcctcgcattc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982818 |
ataaaattatgagtatttttgcagatgatagctctggcaatagcaattggtgttggtatacatgctatttatcatcttgcttgtgattttcctcgcattc |
39982917 |
T |
|
| Q |
615 |
ttcatgcaagcaatgaaaagtacaagctgattgagccttttttcggagagaaaccatcaaattactggcattttgtcaaatcttgggaaggggtaacagg |
714 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982918 |
ttcatgcaagcaatgaaaagtacaagctgattgagccttttttcggagagaaaccaacaaattactggcattttgtcaaatcttgggaaggggtaacagg |
39983017 |
T |
|
| Q |
715 |
aattctaatggttgtgctaatggcaatagcctttacactggccaatactaggttcaggaggaatcgcaccaaactacctaaa |
796 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39983018 |
aattctaatggttgtgctaatggcaatagcctttacactggccaatactaggttcaggaggaatcgcaccaaactacctaaa |
39983099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 5e-49; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 532 - 747
Target Start/End: Original strand, 44885554 - 44885769
Alignment:
| Q |
532 |
tttgcagatgatagctctggcaatagcaattggtgttggtatacatgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaagcaatgaa |
631 |
Q |
| |
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||||||| | |||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||| | |||| |
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| T |
44885554 |
tttgcaggtaatagctgtggcagtagcaattggagttggtatacatgctatttatcatcttgcttgcgactttccacgccttcttcatgcaaatagtgaa |
44885653 |
T |
|
| Q |
632 |
aagtacaagctgattgagccttttttcggagagaaaccatcaaattactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggttgtgc |
731 |
Q |
| |
|
||||||||||| || || || ||||| ||| || || || ||||||| ||||||||||| ||||| |||||||| |||||||| ||| |||||||||| |
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| T |
44885654 |
aagtacaagctcatggaaccattttttggaaagcaagcaacaaattattggcattttgtgaaatcatgggaaggagtaacagggattataatggttgttt |
44885753 |
T |
|
| Q |
732 |
taatggcaatagcctt |
747 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
44885754 |
taatggcaatagcctt |
44885769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 533 - 773
Target Start/End: Original strand, 44915194 - 44915434
Alignment:
| Q |
533 |
ttgcagatgatagctctggcaatagcaattggtgttggtatacatgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaagcaatgaaa |
632 |
Q |
| |
|
|||||| |||| ||| ||||| |||||| ||| ||||||||||||||||||||||||||| |||| || ||||||||| |||||||||||| | ||||| |
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|
| T |
44915194 |
ttgcaggtgattgctgtggcagtagcaactggagttggtatacatgctatttatcatcttacttgcgactttcctcgccttcttcatgcaaatagtgaaa |
44915293 |
T |
|
| Q |
633 |
agtacaagctgattgagccttttttcggagagaaaccatcaaattactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggttgtgct |
732 |
Q |
| |
|
|||||||||| || || || ||||| ||| || ||||| ||| ||| ||||||||||| ||||| |||||||| ||||| || ||| |||||||||| | |
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|
| T |
44915294 |
agtacaagctcatggaaccattttttggaaagcaaccaacaagttattggcattttgtgaaatcatgggaaggagtaacggggattgtaatggttgtttt |
44915393 |
T |
|
| Q |
733 |
aatggcaatagcctttacactggccaatactaggttcagga |
773 |
Q |
| |
|
|||| |||||||||| |||||||| | | || ||||||||| |
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| T |
44915394 |
aatgacaatagccttcacactggctagtccttggttcagga |
44915434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 28 - 408
Target Start/End: Original strand, 44914329 - 44914709
Alignment:
| Q |
28 |
ggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagataccaagtacttct |
127 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||| | ||||| ||| |||||| || || | ||||||||||| ||| ||||| |
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|
| T |
44914329 |
ggagatagtaagtacctgagccaaatgctaagcataaagcttaagggtacatatgaatacaatcctgttcggaagaggtatagagatgccatttactttc |
44914428 |
T |
|
| Q |
128 |
tccaggataactggcgaagatcctgggtatttgctctgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgc |
227 |
Q |
| |
|
| ||||| || |||| |||| | ||| |||| | || |||||| |||| |||| || |||||||||| ||||| |||| || || |||| | ||| |
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|
| T |
44914429 |
tgcaggacaattggcaaagaacttggatattggtactatggattggtgttatgtgtggtctatttgcctacaaattcatgcagtacagaagaaaagatgc |
44914528 |
T |
|
| Q |
228 |
atataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacacc |
327 |
Q |
| |
|
||| |||| ||||| || |||||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||| || |||||||| ||||||||| |
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|
| T |
44914529 |
ttatgaagtaatgggtcattgtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatcttgttacctgtttgtcgaaacacc |
44914628 |
T |
|
| Q |
328 |
atcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatggcctcaattttcacaaggtaattttt |
408 |
Q |
| |
|
||||| ||||| ||||| |||||||| |||||| | |||||||||||||||| |||||| || |||||||||| |||| |
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|
| T |
44914629 |
atcacatggcttaggaacaagaccaaactaggcattgctgttccttttgatgataacctcaacttccacaaggtaagtttt |
44914709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 164 - 407
Target Start/End: Original strand, 44898551 - 44898794
Alignment:
| Q |
164 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
263 |
Q |
| |
|
|||||||| |||| |||| || |||||||||| ||||| |||| ||||| |||| | |||||||| |||||||||| || ||||| || ||||| || |
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| T |
44898551 |
tgtggattggtgttatgtgtggtctatttgcctacaaattcatgcagtatagaagaaaagctgcatatgaagtgatgggccattgtgtctgtatggctaa |
44898650 |
T |
|
| Q |
264 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
363 |
Q |
| |
|
||| || ||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||| | || ||||| ||| | ||||||||||||||| | |
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|
| T |
44898651 |
aggtgcagctgagacactcaaattgaatatggccattatcttattacctgtttgccgaaacaccgtaacctggcttagggacaagaccaagctaggcatt |
44898750 |
T |
|
| Q |
364 |
tttgttccttttgatgatggcctcaattttcacaaggtaatttt |
407 |
Q |
| |
|
||||||||||||||| |||| | |||||| |||||||||| |
|
|
| T |
44898751 |
gctgttccttttgatgacaacctccactttcaccaggtaatttt |
44898794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 531 - 747
Target Start/End: Original strand, 44898937 - 44899153
Alignment:
| Q |
531 |
ttttgcagatgatagctctggcaatagcaattggtgttggtatacatgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaagcaatga |
630 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | || |||| || | | ||| |
|
|
| T |
44898937 |
ttttgcagataatagctgttgcaatagcaattggagttggtatacatgctatttatcatcttgcttgtgactttcctagtcttattcacgcgaatagtga |
44899036 |
T |
|
| Q |
631 |
aaagtacaagctgattgagccttttttcggagagaaaccatcaaattactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggttgtg |
730 |
Q |
| |
|
||||||| |||| || || || ||||| ||| || || || ||| ||| ||||||||||| ||||| |||||||| |||||||| ||| |||||||||| |
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|
| T |
44899037 |
aaagtacgagctcatggaaccattttttggaaagcaagcaacaagttattggcattttgtgaaatcatgggaaggagtaacagggattataatggttgtt |
44899136 |
T |
|
| Q |
731 |
ctaatggcaatagcctt |
747 |
Q |
| |
|
||||| |||| ||||| |
|
|
| T |
44899137 |
ttaatgacaattgcctt |
44899153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 164 - 403
Target Start/End: Original strand, 44885223 - 44885462
Alignment:
| Q |
164 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
263 |
Q |
| |
|
|||||||| | || |||||||| |||||||||| ||||||||||| ||| | |||| | |||| ||| | |||||||| || ||||| |||||||| || |
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|
| T |
44885223 |
tgtggattggagttatgttaggtctatttgcctacaaatttgtgcagtatcgaagaaaagctgcttatgaggtgatgggccattgtgtttgcatggctaa |
44885322 |
T |
|
| Q |
264 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
363 |
Q |
| |
|
||| || ||||| ||||| |||||||||||||| ||||||| || ||||||||||||||||| | || |||||||||| ||||||||||||||| | |
|
|
| T |
44885323 |
aggtgcagctgagacactcaaattgaacatggctcttatcttgttacctgtttgccgaaacactgttacatggctcaggagcaagaccaagctaggcatt |
44885422 |
T |
|
| Q |
364 |
tttgttccttttgatgatggcctcaattttcacaaggtaa |
403 |
Q |
| |
|
||||||||||| |||| |||||| || |||||||||| |
|
|
| T |
44885423 |
gttgttccttttaatgacaacctcaacttccacaaggtaa |
44885462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 259 - 402
Target Start/End: Complemental strand, 46562263 - 46562120
Alignment:
| Q |
259 |
gcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctag |
358 |
Q |
| |
|
||||| || |||||||| || || || || |||||||| | || ||| |||||||||| |||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
46562263 |
gcaaagggtgctgctgagactctcaagttcaacatggcattaattttaatgcctgtttgtagaaacaccatcacttggctcagaagcaagaccaaattag |
46562164 |
T |
|
| Q |
359 |
gcgcttttgttccttttgatgatggcctcaattttcacaaggta |
402 |
Q |
| |
|
| | | ||||||| ||||||||| | |||| |||||||||||| |
|
|
| T |
46562163 |
gagttgttgttccctttgatgataacatcaactttcacaaggta |
46562120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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