View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12751_low_7 (Length: 468)
Name: NF12751_low_7
Description: NF12751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12751_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 174 - 452
Target Start/End: Complemental strand, 53336755 - 53336477
Alignment:
| Q |
174 |
tagtaaagatgttccgactttgtgaatgcggtaaattgccgagacatccaatttctaaattaagatgatgtttgaggcaaagaaaatgtcgtcgttacgg |
273 |
Q |
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| T |
53336755 |
tagtaaagatgttccgactttgtgaatgcggtaaattgccaagacatccaatttctaaattaagatgatgtttgaggcaaagaaaatgtcgtcgttacgg |
53336656 |
T |
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| Q |
274 |
cgacactgttatgatccttgcaactcagtgctttaagtattttccacgacaccttaccggagctccgattcaagtccaaatttccacttgtttccgaagc |
373 |
Q |
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| T |
53336655 |
cgacactgttatgatccttgcaactcagtgctttaagtattttccacgacaccttaccggagctccgattcaagttcaaatttccacttgtttccgaagc |
53336556 |
T |
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| Q |
374 |
cggaaacatacttttcgatggattccggcgaacctgccggtttttaatatcattgagttccatttccggcggattcttc |
452 |
Q |
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| T |
53336555 |
cggaaacatacttttcgatggattccggcgaacctgacggtttttaatatcattgagttccatttccggcggattcttc |
53336477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 53336912 - 53336832
Alignment:
| Q |
11 |
cataggcgcacacctcaattgaaccggg-ttcttcgcaatttgtcgcatacaaacattcaaaacatttaataattcttgga |
90 |
Q |
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|||||| |||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
53336912 |
cataggtgcacacctcaattgaaccaggattcttcgcaatatgtcgcatacaaacattcaaaacatttaataatccttgga |
53336832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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