View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12752_high_1 (Length: 406)
Name: NF12752_high_1
Description: NF12752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12752_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 31923849 - 31923468
Alignment:
| Q |
11 |
caaaggtctccgtagatcggccaagaaggtttctaggtggacccgggtcatttccgccgcgatgcaacgccaagtgtggcaaatgtataccttgcaaacc |
110 |
Q |
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| T |
31923849 |
caaaggtctccgtagattggccaagaaggtttctaggtggacccgggtcatttccgccgcgatgcaatgccaagtgtggcaaatgtataccttgcaaacc |
31923750 |
T |
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| Q |
111 |
ggtccatgtgacggtgccaccgggaacaccggtgacagccgagtactatcctgaggcatggagatgcaagtgtggcaacaagtattacatgccatgatta |
210 |
Q |
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| T |
31923749 |
ggtccatgtgacggtgccaccgggaacaccggtgacagccgagtactatcctgaggcatggagatgcaagtgtggcaacaagtattacatgccatgatta |
31923650 |
T |
|
| Q |
211 |
atgaatatttaattttctctatgtttgatatatttgatcacttcatcttagtaaactatatgaagactcttatccttttgagatgagtt-atttagtttt |
309 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
31923649 |
atgaatatttaattttctctctgtttgatatatttgatcacttcatcttagt-aactatatgaagactcttatccagttgagatgagttgttttagtttt |
31923551 |
T |
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| Q |
310 |
agtt--tgtggtagatattgaatatgaaaacatagtacagaacttgatttgacatatataaaacaacctcgattagacctatt |
390 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31923550 |
agtttgtgtggtagatattgaatatgaaaacatagtacagaacttgatttgacatatataaaacaacctcgattagacctatt |
31923468 |
T |
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