View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12752_high_1_N (Length: 378)

Name: NF12752_high_1_N
Description: NF12752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12752_high_1_N
NF12752_high_1_N
[»] chr8 (1 HSPs)
chr8 (10-376)||(29710918-29711279)
[»] chr4 (4 HSPs)
chr4 (10-376)||(55804179-55804541)
chr4 (10-126)||(55808770-55808885)
chr4 (10-63)||(31452882-31452935)
chr4 (13-62)||(31465850-31465899)
[»] chr5 (2 HSPs)
chr5 (10-376)||(15169877-15170243)
chr5 (10-376)||(15165610-15165980)
[»] chr7 (3 HSPs)
chr7 (10-47)||(1524730-1524767)
chr7 (10-43)||(8491473-8491506)
chr7 (10-43)||(8518280-8518313)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 29711279 - 29710918
Alignment:
Q  10 ataatactacaagtaaatattctaattagcaactcgattattgaaaaatcaaatattaatctcaatacttgatttaaaactaacgacccaagtcgctgaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  29711279 ataatactacaagtaaatattctaattagcaactcgattattgaaaaatcaaatattaatctcaatacttgatttaaaactaacgacc-aagtcgttgaa 29711181  T
Q  110 aatatgcgaatatatggannnnnnnnnnnnnnggaaaggaaattacatatacaagaaaaggataacaaatgtacaaagagaataagaacaccaaaggtgg 209  Q
    |||||| |||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29711180 aatatgtgaatatatggatttttttttt----ggaaaggaaattacatatacaagaaaaggataacaaatgtacaaagagaataagcacaccaaaggtgg 29711085  T
Q  210 cccaaggaaaaaaccccaacaataacataaaaagaacatctgcaacactactaggggaactaaaaaaccaacaccatcacaaaaacaacaacacaagaaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29711084 cccaaggaaaaaaccccaacaataacataaaaagaacatctgcaacactactaggggaactaaaaaaccaacaccatcacaaaaacaacaacacaagaaa 29710985  T
Q  310 tctccatccctcatggtgcccaaaacaaatgaagaatggaccaagccaaccccaccagagagataag 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29710984 tctccatccctcatggtgcccaaaacaaatgaagaatggaccaagccaaccccaccagagagataag 29710918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 55804179 - 55804541
Alignment:
Q  10 ataatactacaagtaaatattctaattagcaactcgattattgaaaaatcaaatattaatctcaatacttgatttaaaactaacgacccaagtcgctgaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  55804179 ataatactacaagtaaatattctaattagcaactcgattattgaaaaatcaaatattaatctcaatacttgatttaaaactaacgacc-aagtcgctgaa 55804277  T
Q  110 aatatgcgaatatatggannnnnnnnnnnnnnggaaaggaaattacatatacaagaaaaggataacaaatgtacaaagagaataagaacaccaaaggtgg 209  Q
    | |||| |||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  55804278 agtatgggaatatatggaatttttttttt---ggaaaggaaattacatatacaagaaaaggataacaaatgtacaaagagaataagcacaccaaaggtgg 55804374  T
Q  210 cccaaggaaaaaaccccaacaataacataaaaagaacatctgcaacactactaggggaactaaaaaaccaacaccatcacaaaaacaacaacacaagaaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55804375 cccaaggaaaaaaccccaacaataacataaaaagaacatctgcaacactactaggggaactaaaaaaccaacaccatcacaaaaacaacaacacaagaaa 55804474  T
Q  310 tctccatccctcatggtgcccaaaacaaatgaagaatggaccaagccaaccccaccagagagataag 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55804475 tctccatccctcatggtgcccaaaacaaatgaagaatggaccaagccaaccccaccagagagataag 55804541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 55808770 - 55808885
Alignment:
Q  10 ataatactacaagtaaatattctaattagcaactcgattattgaaaaatcaaatattaatctcaatacttgatttaaaactaacgacccaagtcgctgaa 109  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  55808770 ataatactacaagtaaatattataattagcaactcgattattgaaaaatcaaatattaatctcaatacttgatttaaaactaacga-ccaagtcgctgaa 55808868  T
Q  110 aatatgcgaatatatgg 126  Q
    | |||| ||||||||||    
T  55808869 agtatgggaatatatgg 55808885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 31452935 - 31452882
Alignment:
Q  10 ataatactacaagtaaatattctaattagcaactcgattattgaaaaatcaaat 63  Q
    ||||||||||||| ||||| || |||||||||||| |||||||| | |||||||    
T  31452935 ataatactacaagaaaataatccaattagcaactcaattattgacacatcaaat 31452882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 31465899 - 31465850
Alignment:
Q  13 atactacaagtaaatattctaattagcaactcgattattgaaaaatcaaa 62  Q
    |||||||||| |||||||| |||||||||||| |||||||| | ||||||    
T  31465899 atactacaagaaaatattcaaattagcaactcaattattgatacatcaaa 31465850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 15170243 - 15169877
Alignment:
Q  10 ataatactacaagtaaatattctaattagcaactcgattattgaaaaatcaaatattaatctcaatacttgatttaaaactaacgacccaagtcgctgaa 109  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  15170243 ataatactacaagtaaatattctaattagcaactcggttattgaaaaatcaaatcataatctcaatacttgatttaaaactaacgacc-aattcgctgaa 15170145  T
Q  110 aatatgcgaatatatggannnnnnnnnnnnnnggaaaggaaattacatatacaagaaaaggataacaaatgtacaaagagaataagaacaccaaaggtgg 209  Q
    | |||| |||| |||| |              ||||||||||||||||||| |||||||||||||| || ||||||||||||||||  ||||||||||||    
T  15170144 agtatgtgaatgtatgaatttttttttttttgggaaaggaaattacatatagaagaaaaggataacgaaagtacaaagagaataagcgcaccaaaggtgg 15170045  T
Q  210 cccaaggaaaaaaccccaacaataacataaaaagaacatctgcaacactactagggg-aactaaaaaaccaacaccatcacaaaaacaacaacacaagaa 308  Q
     ||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15170044 accaaggaaaaaaccccaacaataccataaaaaggacatctgcaacactaccagggggaactaaaaaaccaacaccatcacaaaaacaacaacacaagaa 15169945  T
Q  309 atctccatccctcatggtgcccaaaacaaatgaagaatggaccaagccaaccccaccagagagataag 376  Q
    |||||| |||||||| |||||||||||||| |||||||||||||||| ||| |||||||||| |||||    
T  15169944 atctccctccctcatagtgcccaaaacaaacgaagaatggaccaagcaaactccaccagagatataag 15169877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 15165980 - 15165610
Alignment:
Q  10 ataatactacaagtaaatattctaattagcaactcgattattgaaaaatcaaatattaatctcaatacttgatttaaaactaacgacccaagtcgctgaa 109  Q
    ||||||||| |  ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||  |||||||||||    
T  15165980 ataatactatagataaatattctaattaacaactcgattattgaaaaatcaaatcttaatctcaatacttgatttaaaactaa--acgaaagtcgctgaa 15165883  T
Q  110 aatatgcgaatatatggannnnnnnnnnnnnnggaaaggaaattacatatacaagaaaaggataacaaatgtacaaagagaataagaacaccaaaggtgg 209  Q
    | |||| ||||||| |||              |||||| |||||| |||||||| ||||||||  | |||  |||||||||||||| ||||||||||||     
T  15165882 attatgtgaatataaggattttttttttttttggaaagtaaattatatatacaataaaaggatctcgaataaacaaagagaataagcacaccaaaggtga 15165783  T
Q  210 cccaaggaaa--------aaaccccaacaataacataaaaagaacatctgcaacactacta-ggggaactaaaaaaccaacaccatcacaaaaacaacaa 300  Q
    ||||||||||        ||| ||||||| ||||||||||||||||  ||||||||||||| |||||||||||||||||||||  |||||||   |||||    
T  15165782 cccaaggaaagaaaaaaaaaaacccaacagtaacataaaaagaacacatgcaacactactagggggaactaaaaaaccaacactgtcacaaa---aacaa 15165686  T
Q  301 cacaagaaatctccatccctcatggtgcccaaaacaaatgaagaatggaccaagccaaccccaccagagagataag 376  Q
    |||||||||||||| |||||  | |  ||||||||||| |||||||||||||| ||||| |||| |||||||||||    
T  15165685 cacaagaaatctccctccctagtagcacccaaaacaaaggaagaatggaccaaaccaactccactagagagataag 15165610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 1524767 - 1524730
Alignment:
Q  10 ataatactacaagtaaatattctaattagcaactcgat 47  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1524767 ataatactacaagtaaatattctaattagcaactcgat 1524730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 8491473 - 8491506
Alignment:
Q  10 ataatactacaagtaaatattctaattagcaact 43  Q
    ||||||||||||| ||||||||||||||||||||    
T  8491473 ataatactacaaggaaatattctaattagcaact 8491506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 8518280 - 8518313
Alignment:
Q  10 ataatactacaagtaaatattctaattagcaact 43  Q
    ||||||||||||| ||||||||||||||||||||    
T  8518280 ataatactacaaggaaatattctaattagcaact 8518313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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