View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12752_high_2 (Length: 351)
Name: NF12752_high_2
Description: NF12752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12752_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 31706313 - 31705961
Alignment:
| Q |
1 |
tttaccagcttggccaggaaggcatctattagaggatggtgaaaaaagaaggtattttggattgaagacagaatcaagaggtttagttgagtttgaatgt |
100 |
Q |
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| T |
31706313 |
tttaccagcttggccaggaaggcatctattagaggatggtgaaaaaagaaggtattttggattgaagacagaatcaagaggtttagttgagtttgaatgt |
31706214 |
T |
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| Q |
101 |
agaaatcaaaaagaatatgaattgtggacacaaggtgtttcaagacttctttccattgtttcacacaggaaaaacagaaatggaatctaatatttgtt-- |
198 |
Q |
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| T |
31706213 |
agaaatcaaagagaatatgaattgtggacacaaggtgtttcaagacttctttccattgtttcacacaggaaaaacagaaatggaatctaatatttgttcc |
31706114 |
T |
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| Q |
199 |
-------gccaatgttgactactaaacttgtttaaaataaaactatattatatttatgtagttagctttgttttgcaaatcctataagggaaattaatag |
291 |
Q |
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| T |
31706113 |
caatctagccaatgttgactactaaacttgtttaaaatcaaactatattatatttatgtagttagctttgttttgcaaatcctataagggaaattaatag |
31706014 |
T |
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| Q |
292 |
attttgtaacattggaatgagcaatgaagtgctagaaatatagtctgtgctcc |
344 |
Q |
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| T |
31706013 |
attttgtaacattggaatgagcaatgaagtgctagaaatatagtttgtgctcc |
31705961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 15451285 - 15451227
Alignment:
| Q |
86 |
gttgagtttgaatgtagaaatcaaaaagaatatgaattgtggacacaaggtgtttcaag |
144 |
Q |
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| T |
15451285 |
gttgagtttgagtgcagaagtcaaagagaatatgatgtgtggactcaaggtgtttcaag |
15451227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 38269719 - 38269871
Alignment:
| Q |
1 |
tttaccagcttggccaggaaggcatctattagaggatggtgaaaaaagaaggtattttggattgaagacagaatcaagaggtttagttgagtttgaatgt |
100 |
Q |
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||||||||| ||||||||||| |||||| ||| ||||| |||||| || | || || |||||||| ||||| || || || | || ||||| || ||| |
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| T |
38269719 |
tttaccagcatggccaggaagagatctatcagatgatggagaaaaacgatgctacttcggattgaaaacagactcgaggggaattgtcgagttcgagtgt |
38269818 |
T |
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| Q |
101 |
agaaatcaaaaagaatatgaattgtggacacaaggtgtttcaagacttctttc |
153 |
Q |
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| T |
38269819 |
agaaatcaaagagaatatgatatctggactcaaggggtttctaggcttctttc |
38269871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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