View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12753_high_1 (Length: 427)

Name: NF12753_high_1
Description: NF12753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12753_high_1
NF12753_high_1
[»] chr8 (10 HSPs)
chr8 (4-209)||(17312364-17312569)
chr8 (10-208)||(17259750-17259948)
chr8 (4-209)||(17335626-17335831)
chr8 (231-371)||(41092171-41092315)
chr8 (263-332)||(35759183-35759252)
chr8 (263-332)||(41348179-41348248)
chr8 (264-332)||(30272134-30272202)
chr8 (256-332)||(36935659-36935735)
chr8 (272-321)||(35387420-35387469)
chr8 (272-333)||(42111558-42111619)
[»] scaffold0155 (1 HSPs)
scaffold0155 (225-408)||(17332-17519)
[»] chr2 (3 HSPs)
chr2 (230-408)||(16426551-16426733)
chr2 (232-408)||(40992222-40992402)
chr2 (272-332)||(29921480-29921540)
[»] chr4 (16 HSPs)
chr4 (232-408)||(31634103-31634283)
chr4 (265-332)||(49399506-49399573)
chr4 (256-325)||(39413573-39413642)
chr4 (237-332)||(52758654-52758753)
chr4 (256-325)||(11680304-11680373)
chr4 (256-325)||(11688583-11688652)
chr4 (239-325)||(12590154-12590244)
chr4 (256-325)||(25655590-25655659)
chr4 (272-325)||(53289517-53289570)
chr4 (369-408)||(34372113-34372152)
chr4 (256-325)||(46764280-46764349)
chr4 (256-332)||(3619026-3619102)
chr4 (232-325)||(31910554-31910651)
chr4 (285-329)||(54007629-54007673)
chr4 (280-325)||(47523270-47523315)
chr4 (285-329)||(54007549-54007593)
[»] chr7 (7 HSPs)
chr7 (232-371)||(41224748-41224891)
chr7 (232-371)||(29314581-29314724)
chr7 (263-332)||(44896081-44896150)
chr7 (232-299)||(29007176-29007247)
chr7 (232-325)||(29006347-29006444)
chr7 (272-333)||(33687693-33687754)
chr7 (369-405)||(32904571-32904607)
[»] chr1 (3 HSPs)
chr1 (303-408)||(45065267-45065372)
chr1 (256-333)||(32538446-32538523)
chr1 (227-333)||(49611503-49611613)
[»] chr6 (5 HSPs)
chr6 (232-332)||(1034721-1034825)
chr6 (239-325)||(10608271-10608361)
chr6 (270-333)||(930966-931029)
chr6 (256-333)||(28534793-28534870)
chr6 (263-333)||(18605036-18605106)
[»] chr3 (5 HSPs)
chr3 (232-333)||(38741263-38741368)
chr3 (232-332)||(46719661-46719765)
chr3 (263-333)||(26837140-26837210)
chr3 (272-333)||(37999508-37999569)
chr3 (272-333)||(46739661-46739721)
[»] scaffold0180 (1 HSPs)
scaffold0180 (272-333)||(23035-23096)
[»] chr5 (2 HSPs)
chr5 (263-333)||(42654870-42654940)
chr5 (369-408)||(4821105-4821144)
[»] scaffold0175 (1 HSPs)
scaffold0175 (282-333)||(26316-26365)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 17312364 - 17312569
Alignment:
Q  4 aaaggagagaaagacggaacaaacgagaggaacgtagaacgcgttatttcgaggcactttggaaagagggaacttgtgaggtttatatagtgcgtagggt 103  Q
    ||||||||||||||  ||||||||||||||| |||| |||||  | |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17312364 aaaggagagaaagagagaacaaacgagaggagcgtaaaacgctctgtttcgatgcactttggaaagagggaacttgtgaggtttatatagtgcgtagggt 17312463  T
Q  104 caggtttgacggctacgataacgcgtgtggtggaaacttggacggttatgattgaattaaaataaaaccgttaacgcgttttctttctaaataaggcggt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||    
T  17312464 caggtttgacggctacgataacgcgtgtggtggaaacttggacggttatgattgaactaaaataaaacggttgacgcgttctctttctaaataaggcggt 17312563  T
Q  204 gtgaat 209  Q
    ||||||    
T  17312564 gtgaat 17312569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 17259750 - 17259948
Alignment:
Q  10 gagaaagacggaacaaacgagaggaacgtagaacgcgttatttcgaggcactttggaaagagggaacttgtgaggtttatatagtgcgtagggtcaggtt 109  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| | || |||||| |||    
T  17259750 gagaaagagagaacaaacgagaggaacgtagaacgcgctatttcgaggcactttggaaagagggaacttatgaggcttatatagagggtggggtcaagtt 17259849  T
Q  110 tgacggctacgataacgcgtgtggtggaaacttggacggttatgattgaattaaaataaaaccgttaacgcgttttctttctaaataaggcggtgtgaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  17259850 tgacggctacgataacgcgtgtggtggaaacttggacggttatgattgaactaaaataaaacggttaacgcgtttcctttctaaataaggcggtgtgaa 17259948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 17335626 - 17335831
Alignment:
Q  4 aaaggagagaaagacggaacaaacgagaggaacgtagaacgcgttatttcgaggcactttggaaagagggaacttgtgaggtttatatagtgcgtagggt 103  Q
    ||||||||||||||  ||||||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||| ||||| |||||||| | |  ||||    
T  17335626 aaaggagagaaagagagaacaaacgagaggagcgtagaatgcgctatttcgaggcactttggaaagacggaacttatgaggcttatatagagggaggggt 17335725  T
Q  104 caggtttgacggctacgataacgcgtgtggtggaaacttggacggttatgattgaattaaaataaaaccgttaacgcgttttctttctaaataaggcggt 203  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| ||||||| ||||||||||||||||| |    
T  17335726 caagtttgacggctacgataacgcgtgtggtggaaacttggacggttatgattgaactaaaattaaacggttgacgcgttctctttctaaataaggcgct 17335825  T
Q  204 gtgaat 209  Q
    ||||||    
T  17335826 gtgaat 17335831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 231 - 371
Target Start/End: Original strand, 41092171 - 41092315
Alignment:
Q  231 tggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctt 326  Q
    ||||| |||||||||||||||||||||    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41092171 tggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctt 41092270  T
Q  327 tcaacacactannnnnnncttcatcatcttccaccaccatccttc 371  Q
    |||||||||||       |||||||||||||||||||||||||||    
T  41092271 tcaacacactatttttttcttcatcatcttccaccaccatccttc 41092315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 35759252 - 35759183
Alignment:
Q  263 caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 332  Q
    |||||| | |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  35759252 caccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 35759183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 41348179 - 41348248
Alignment:
Q  263 caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 332  Q
    |||||| | |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  41348179 caccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 41348248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 30272134 - 30272202
Alignment:
Q  264 accatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 332  Q
    ||||||| ||||||| |||||||||||| |||||||||||| |||||||||||| ||| ||| ||||||    
T  30272134 accataggaaagttaatttttaaccattagattaaatagggtacacaattttattatgatctctcaaca 30272202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 36935659 - 36935735
Alignment:
Q  256 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 332  Q
    ||||| |||||||  |||||||| |||||||  ||| |||||||||||| |||||||||||||||| ||| ||||||    
T  36935659 tttttttcaccatgaaaaagttaatttttaataattagattaaatagggtacacaattttatcatgatctctcaaca 36935735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 35387469 - 35387420
Alignment:
Q  272 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatg 321  Q
    ||||||||||||| |||||||||||| ||||| |||||| ||||||||||    
T  35387469 aaagttagtttttgaccatttgattagataggaaacacacttttatcatg 35387420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 42111558 - 42111619
Alignment:
Q  272 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 333  Q
    ||||||||||||| ||||||  |||| |||||||| | |||||||||||||||| |||||||    
T  42111558 aaagttagtttttgaccattaaattagatagggaatataattttatcatggtctctcaacac 42111619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 225 - 408
Target Start/End: Original strand, 17332 - 17519
Alignment:
Q  225 ataagatggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcat 320  Q
    |||| |||||| |||||||||||| ||||||||    |||| |||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17332 ataatatggtgccatttaatttggaaaaggcttgttttttcccaccatgggaaagttagtttttaaccatttgatcaaatagggaacacaattttatcat 17431  T
Q  321 ggtctttcaacacactannnnnnncttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 408  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17432 ggtctttcaacacactatttttttcttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 17519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 230 - 408
Target Start/End: Original strand, 16426551 - 16426733
Alignment:
Q  230 atggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 325  Q
    |||||| |||||||||||||||||||||    |||| |||||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  16426551 atggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaagttaatttttaaccatttgattaagtagggaatacaattttatcatggtct 16426650  T
Q  326 ttcaacacactannnnnnncttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 408  Q
    ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16426651 ttcaacacactatttttttcttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 16426733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 232 - 408
Target Start/End: Original strand, 40992222 - 40992402
Alignment:
Q  232 ggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 327  Q
    |||| |||||||||||||||||| ||    ||||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40992222 ggtgccatttaatttgggaaaggtttgttttttcctaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 40992321  T
Q  328 caacacactannnnnnncttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 408  Q
     |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40992322 taacacactatttttttcttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 40992402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 29921540 - 29921480
Alignment:
Q  272 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 332  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||| ||||||| ||||||    
T  29921540 aaagttagtttttaaccattaaattaaatagggtacacaattttataatggtctctcaaca 29921480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 232 - 408
Target Start/End: Original strand, 31634103 - 31634283
Alignment:
Q  232 ggtgtcatttaatttgggaaaggctt---tttctc-accatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 327  Q
    |||| ||||||||||| |||||||||   ||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31634103 ggtgccatttaatttgcgaaaggcttatttttttctaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 31634202  T
Q  328 caacacactannnnnnncttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 408  Q
    |||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31634203 caacacgctatttttttcttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaactaagatc 31634283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 49399573 - 49399506
Alignment:
Q  265 ccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 332  Q
    |||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||||| ||||||    
T  49399573 ccataggaaagttagtttttaaccattagattaaatagggtatacaattttatcatggtctctcaaca 49399506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 325
Target Start/End: Complemental strand, 39413642 - 39413573
Alignment:
Q  256 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 325  Q
    |||||| |||||||| |||||||||||||||||||| |||||| ||| ||||| ||||||||||||||||    
T  39413642 tttttcccaccataggaaagttagtttttaaccattggattaagtagagaacataattttatcatggtct 39413573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 332
Target Start/End: Complemental strand, 52758753 - 52758654
Alignment:
Q  237 catttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 332  Q
    |||||||||||||||| |||    |||||||| ||| | |||||||||||||  ||||| |||||||||||||||||||||||| ||| |||| ||||||    
T  52758753 catttaatttgggaaatgctagttttttctcatcatgggaaagttagtttttggccattagattaaatagggaacacaattttaccatagtctctcaaca 52758654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 11680304 - 11680373
Alignment:
Q  256 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 325  Q
    |||||| |||||| | ||||||||||||| |||||| |||||||||||||||||||| |||| |||||||    
T  11680304 tttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtct 11680373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 11688583 - 11688652
Alignment:
Q  256 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 325  Q
    |||||| |||||| | ||||||||||||| |||||| |||||||||||||||||||| |||| |||||||    
T  11688583 tttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtct 11688652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 12590244 - 12590154
Alignment:
Q  239 tttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 325  Q
    ||||||||||||||||||    ||||  |||||| | ||||||||||||| |||||| |||||||||||||||||||| |||| |||||||    
T  12590244 tttaatttgggaaaggctagtttttttccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtct 12590154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 325
Target Start/End: Complemental strand, 25655659 - 25655590
Alignment:
Q  256 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 325  Q
    |||||| |||||| | ||||||||||||| |||||| ||||||||||| |||||||| |||| |||||||    
T  25655659 tttttcccaccatgggaaagttagtttttgaccattagattaaataggaaacacaatgttattatggtct 25655590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 53289517 - 53289570
Alignment:
Q  272 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 325  Q
    ||||||| ||||||| |||| |||||||||||| ||||||||||||||||||||    
T  53289517 aaagttaatttttaatcattagattaaatagggtacacaattttatcatggtct 53289570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 408
Target Start/End: Complemental strand, 34372152 - 34372113
Alignment:
Q  369 ttcacccgtttttcctcttctcatttcttcaactaagatc 408  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  34372152 ttcacccatttttcctcttctcatttcttcaactaagatc 34372113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 46764280 - 46764349
Alignment:
Q  256 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 325  Q
    |||||| |||||| | ||||||||||||| ||||||  |||||||||| |||||||| |||| |||||||    
T  46764280 tttttcccaccatgggaaagttagtttttgaccattaaattaaataggaaacacaatgttattatggtct 46764349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 3619026 - 3619102
Alignment:
Q  256 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 332  Q
    |||| |||| |||| ||||||||  ||||||| ||| |||||||||||  |||||||||||||||| ||| ||||||    
T  3619026 ttttcctcatcataaaaaagttaagttttaactattagattaaataggatacacaattttatcatgatctctcaaca 3619102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 31910554 - 31910651
Alignment:
Q  232 ggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 325  Q
    ||||||||||||||| ||||||||||    |||| |||||| | ||||||||||||||||||||  |||||| |||     |||||||||||||||||    
T  31910554 ggtgtcatttaatttaggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattaaattaaagaggagtatcaattttatcatggtct 31910651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 54007629 - 54007673
Alignment:
Q  285 aaccatttgattaaatagggaacacaattttatcatggtctttca 329  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||    
T  54007629 aaccattagattaaataaggaacacaattttatcatagtctttca 54007673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 47523270 - 47523315
Alignment:
Q  280 tttttaaccatttgattaaatagggaacacaattttatcatggtct 325  Q
    ||||| |||||| ||||||||| |||||||||||||||||| ||||    
T  47523270 tttttgaccattagattaaataaggaacacaattttatcatagtct 47523315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 54007593 - 54007549
Alignment:
Q  285 aaccatttgattaaatagggaacacaattttatcatggtctttca 329  Q
    |||||||  |||||||| |||||||||||||||||| ||||||||    
T  54007593 aaccattatattaaataaggaacacaattttatcatagtctttca 54007549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 232 - 371
Target Start/End: Complemental strand, 41224891 - 41224748
Alignment:
Q  232 ggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 327  Q
    |||| |||||||||||||||||||||    |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41224891 ggtgccatttaatttgggaaaggcttattttttcccaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 41224792  T
Q  328 caacacactannnnnnncttcatcatcttccaccaccatccttc 371  Q
    ||||||||||       |||||||||||||||||||||||||||    
T  41224791 caacacactatttttttcttcatcatcttccaccaccatccttc 41224748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 232 - 371
Target Start/End: Original strand, 29314581 - 29314724
Alignment:
Q  232 ggtgtcatttaatttgggaaaggctttttct----caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 327  Q
    |||| ||||||||||| ||||||||| || |    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29314581 ggtgccatttaatttgagaaaggcttgtttttttccaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 29314680  T
Q  328 caacacactannnnnnncttcatcatcttccaccaccatccttc 371  Q
    ||||||||||       |||||||||||||||||||||||||||    
T  29314681 caacacactatttttttcttcatcatcttccaccaccatccttc 29314724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 44896081 - 44896150
Alignment:
Q  263 caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaaca 332  Q
    |||||| | |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  44896081 caccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 44896150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 29007247 - 29007176
Alignment:
Q  232 ggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaa 299  Q
    ||||||||||||||||||||||||||    |||| |||||| | |||||||||||||||||||| |||||||    
T  29007247 ggtgtcatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaa 29007176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 29006347 - 29006444
Alignment:
Q  232 ggtgtcatttaatttgggaaaggctt----tttctcaccatagaaaagttagtttttaaccatttgattaaatagg-gaacacaattttatcatggtct 325  Q
    |||| |||||||||||||||||||||    |||| |||||| | |||||||||||||||||||| ||||||| ||| | || |||||||||||||||||    
T  29006347 ggtgccatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaagaggagtac-caattttatcatggtct 29006444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 33687754 - 33687693
Alignment:
Q  272 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 333  Q
    ||||||||||||||||||||  ||||| ||||||||| ||| |||||||||||| |||||||    
T  33687754 aaagttagtttttaaccattgaattaagtagggaacataatgttatcatggtctctcaacac 33687693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 32904607 - 32904571
Alignment:
Q  369 ttcacccgtttttcctcttctcatttcttcaactaag 405  Q
    |||||| ||||||||||||||||||||||||||||||    
T  32904607 ttcaccagtttttcctcttctcatttcttcaactaag 32904571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 303 - 408
Target Start/End: Complemental strand, 45065372 - 45065267
Alignment:
Q  303 ggaacacaattttatcatggtctttcaacacactannnnnnncttcatcatcttccaccaccatccttcacccgtttttcctcttctcatttcttcaact 402  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  45065372 ggaacacaattttatcatggtctttcaacacactatttttttcttcatcatcttccaccatcatcctttacccgtttttcctcttctcatttcttcaact 45065273  T
Q  403 aagatc 408  Q
    ||||||    
T  45065272 aagatc 45065267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 333
Target Start/End: Complemental strand, 32538523 - 32538446
Alignment:
Q  256 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 333  Q
    |||||| |||||| ||||||||||||||||||||||  ||||| ||||||||| ||| |||||||||||| |||||||    
T  32538523 tttttcccaccatggaaaagttagtttttaaccattgaattaagtagggaacataatgttatcatggtctctcaacac 32538446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 333
Target Start/End: Complemental strand, 49611613 - 49611503
Alignment:
Q  227 aagatggtgtcatttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatgg 322  Q
    ||||| ||| ||||||||||||||||||||    ||||| || ||| | ||| |||||||||  ||||| |||||||||||||||||||||||| |||||    
T  49611613 aagatagtgccatttaatttgggaaaggctagttttttcccatcatgggaaaattagtttttggccattagattaaatagggaacacaattttaccatgg 49611514  T
Q  323 tctttcaacac 333  Q
    ||| |||||||    
T  49611513 tctctcaacac 49611503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 332
Target Start/End: Original strand, 1034721 - 1034825
Alignment:
Q  232 ggtgtcatttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 327  Q
    |||||| |||||||||||||||| |    ||| | |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |    
T  1034721 ggtgtcgtttaatttgggaaaggttagtttttccccaccataggaaagttagtttttaaccattagattaaatagggtacacaattttatcatgatctct 1034820  T
Q  328 caaca 332  Q
    |||||    
T  1034821 caaca 1034825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 10608361 - 10608271
Alignment:
Q  239 tttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 325  Q
    ||||||||||||||||||    ||||| |||||| | ||||||||||||| |||||| |||||||||||||||||||| |||| |||||||    
T  10608361 tttaatttgggaaaggctggttttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtct 10608271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 930966 - 931029
Alignment:
Q  270 gaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 333  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||| ||||||| |||||||    
T  930966 gaaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcaacac 931029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 28534793 - 28534870
Alignment:
Q  256 tttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 333  Q
    ||||||||||||| | || ||||||||||||| ||| |||||||||||||||| ||||||| ||| |||| |||||||    
T  28534793 tttttctcaccatgggaaggttagtttttaactattggattaaatagggaacaaaattttaccatagtctctcaacac 28534870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 18605036 - 18605106
Alignment:
Q  263 caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 333  Q
    |||||| | ||||||| ||||||||||||  ||||| ||||||||| |||||||||||||||| |||||||    
T  18605036 caccatgggaaagttaatttttaaccattgaattaagtagggaacataattttatcatggtctctcaacac 18605106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 232 - 333
Target Start/End: Original strand, 38741263 - 38741368
Alignment:
Q  232 ggtgtcatttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 327  Q
    |||| ||||||||||||||| ||||    |||||||| || || |||||||||||||  ||||| |||||||||||||||||||||||| |||||||| |    
T  38741263 ggtgccatttaatttgggaatggctagttttttctcatcaaaggaaagttagtttttggccattagattaaatagggaacacaattttaccatggtctct 38741362  T
Q  328 caacac 333  Q
    ||||||    
T  38741363 caacac 38741368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 332
Target Start/End: Original strand, 46719661 - 46719765
Alignment:
Q  232 ggtgtcatttaatttgggaaaggct----ttttctcaccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 327  Q
    |||| |||||||||||||||| |||    |||||||| ||| | |||||||||||||  ||||| |||||||||||||||||||||||| |||||||| |    
T  46719661 ggtgccatttaatttgggaaatgctagttttttctcatcatgggaaagttagtttttggccattagattaaatagggaacacaattttaccatggtctct 46719760  T
Q  328 caaca 332  Q
    |||||    
T  46719761 caaca 46719765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 26837210 - 26837140
Alignment:
Q  263 caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 333  Q
    |||||| | ||| ||||||||||||||||  ||||| ||||||||| ||||||| |||||||| |||||||    
T  26837210 caccatgggaaaattagtttttaaccattgaattaagtagggaacaaaattttaccatggtctctcaacac 26837140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 37999508 - 37999569
Alignment:
Q  272 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 333  Q
    ||||||||||||||||||||  ||||| ||||||||| ||||||| |||| ||| |||||||    
T  37999508 aaagttagtttttaaccattgaattaagtagggaacaaaattttaccatgatctctcaacac 37999569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 46739661 - 46739721
Alignment:
Q  272 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 333  Q
    |||||||||||  |||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  46739661 aaagttagtttg-aaccatttaattaaatagggaacataatttcatcatggtctctcaacac 46739721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 23096 - 23035
Alignment:
Q  272 aaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 333  Q
    |||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |||||||    
T  23096 aaagttagttttgaaccattagattaaatagggaacataattttatcatggtctctcaacac 23035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 42654870 - 42654940
Alignment:
Q  263 caccatagaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 333  Q
    |||||| | |||||||||||||||||||| |||||| ||||||||| ||||||| |||||||| |||||||    
T  42654870 caccatgggaaagttagtttttaaccattggattaagtagggaacaaaattttaccatggtctctcaacac 42654940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 408
Target Start/End: Complemental strand, 4821144 - 4821105
Alignment:
Q  369 ttcacccgtttttcctcttctcatttcttcaactaagatc 408  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  4821144 ttcacccgcttttcctcttctcatttcttcaactaagatc 4821105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 26316 - 26365
Alignment:
Q  282 tttaaccatttgattaaatagggaacacaattttatcatggtctttcaacac 333  Q
    |||||||||||||| |||| ||||||||||| ||||||||  ||||||||||    
T  26316 tttaaccatttgatcaaatggggaacacaatgttatcatg--ctttcaacac 26365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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