View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12753_high_5 (Length: 354)
Name: NF12753_high_5
Description: NF12753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12753_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 63 - 323
Target Start/End: Complemental strand, 37288752 - 37288497
Alignment:
| Q |
63 |
catatcatagaataagaaattttagacttgaaaacttagataccgacatacttggatatnnnnnnntaagccgtgagcatgatcaaagactttatttcat |
162 |
Q |
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| T |
37288752 |
catatcatagaataagaaattttagacttgaaaacttagatac-gacatacttggatataaaaaaataagccatgagcatgatcaaagactttatttcat |
37288654 |
T |
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| Q |
163 |
gtattaaatatgagcttataaataaattatgatgaagccatatatatataaaccaatcaaggtgagatattccaaattgaagacaaaagctgaaacagta |
262 |
Q |
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| T |
37288653 |
gtattaaatatgagcttataaataaattatgatgaagccatatata----aaccaatcaaggtgagatattccaaagtgaagacaaaagctgaaacagta |
37288558 |
T |
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| Q |
263 |
ttaataagtaggtgtggtagcaaagtgaagacccacatgcatattaaatttgtaatataag |
323 |
Q |
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| T |
37288557 |
ttaataagtaggtgtggtagcaaagtgaagacccacatgcatattaaatttgtaatataag |
37288497 |
T |
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