View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12753_low_1 (Length: 444)

Name: NF12753_low_1
Description: NF12753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12753_low_1
NF12753_low_1
[»] chr5 (2 HSPs)
chr5 (15-431)||(5270271-5270687)
chr5 (34-138)||(29161127-29161231)
[»] chr8 (7 HSPs)
chr8 (23-137)||(30284393-30284507)
chr8 (38-125)||(30051670-30051757)
chr8 (26-120)||(11207434-11207528)
chr8 (316-357)||(22759030-22759071)
chr8 (21-80)||(35578290-35578349)
chr8 (22-125)||(42869167-42869270)
chr8 (58-98)||(11443406-11443446)
[»] chr4 (4 HSPs)
chr4 (54-217)||(5912577-5912737)
chr4 (21-141)||(24188092-24188211)
chr4 (25-94)||(5958671-5958740)
chr4 (32-120)||(38868019-38868107)
[»] chr7 (3 HSPs)
chr7 (24-120)||(48433161-48433257)
chr7 (24-125)||(48433316-48433417)
chr7 (22-98)||(33008504-33008580)
[»] chr1 (3 HSPs)
chr1 (33-118)||(33580774-33580861)
chr1 (23-141)||(6421573-6421691)
chr1 (70-139)||(6349483-6349552)
[»] chr3 (4 HSPs)
chr3 (67-236)||(52750110-52750277)
chr3 (23-120)||(20505163-20505263)
chr3 (25-82)||(3727278-3727335)
chr3 (40-108)||(32471636-32471704)
[»] chr6 (4 HSPs)
chr6 (22-120)||(7379647-7379745)
chr6 (54-118)||(4433071-4433135)
chr6 (24-75)||(30603465-30603516)
chr6 (54-119)||(32847512-32847577)
[»] chr2 (3 HSPs)
chr2 (26-120)||(15396103-15396196)
chr2 (88-125)||(10953499-10953536)
chr2 (158-191)||(14990878-14990911)


Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 5270687 - 5270271
Alignment:
Q  15 aaaaggaacatttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatc 114  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5270687 aaaaggaacatttttaagtaaaaacaagtgacatagcagaattataagttggtatatcatatatgaacttcagaataattcaaggttcaagtcataaatc 5270588  T
Q  115 aaatgagaaaacaatagtggttggttagttatacaaagttgacaaaaggggctagctgcactaagtttaggtagtgatttatttgaatgaatcatggatt 214  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5270587 aaatgagaaaagaatagtggttggttagttatacaaagttgacaaaaggggctagctgcactaagtttaggtagtgatttatttgaatgaatcatggatt 5270488  T
Q  215 catgattcatcatagtgaattgtggtattgtattcaagatgagattcatatccaaaatagataagcctagagattcgtatcatttagatgtttagattca 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5270487 catgattcatcatagtgaattgtggtattgtattcaagatgagattcatatccaaaatagataagcctagagattcgtatcatttagatgtttagattca 5270388  T
Q  315 gttttgtattgaattgagatatgactcgcatgtgtcgtaagattaccacgtttcattttactctgggaacttttgtcttgcttggtaggtagtatcatta 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5270387 gttttgtattgaattgagatatgactcgcatgtgtcgtaagattaccacgtttcattttactctgggaacttttgtcttgcttggtaggtagtatcatta 5270288  T
Q  415 gagtaaggaataccagt 431  Q
    |||||||||||||||||    
T  5270287 gagtaaggaataccagt 5270271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 29161231 - 29161127
Alignment:
Q  34 aaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatgagaaaacaatagtg 133  Q
    |||||||| ||||| | || ||||| ||| || |||||||||||||||| ||| |||||||||||| ||| ||||||  |||||||| |||| || ||||    
T  29161231 aaaaacaaatgacataacaaaattaaaagctgatatatcatatatgaacctcaaaataattcaaggttcatgtcatatgtcaaatgacaaaagaaaagtg 29161132  T
Q  134 gttgg 138  Q
    |||||    
T  29161131 gttgg 29161127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 30284393 - 30284507
Alignment:
Q  23 catttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatgaga 122  Q
    ||||||||||||||||||||||||| | || | ||| || ||| |||||||||||||||| ||| |||||| ||||  |||||||||| ||||||||| |    
T  30284393 catttttaagtaaaaacaagtgacataacaaatttacaaattgatatatcatatatgaacatcaaaataatgcaagaatcaagtcatatatcaaatgaca 30284492  T
Q  123 aaacaatagtggttg 137  Q
    ||| || ||||||||    
T  30284493 aaataaaagtggttg 30284507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 30051757 - 30051670
Alignment:
Q  38 acaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatgagaaaa 125  Q
    |||||||||| | || |||||| ||||| |||||||||||||||  ||| |||||||||||  |||||| ||| ||||||||| ||||    
T  30051757 acaagtgacacaacaaaattattagttgatatatcatatatgaatctcaaaataattcaagattcaagttatatatcaaatgataaaa 30051670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 11207434 - 11207528
Alignment:
Q  26 ttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatga 120  Q
    ||||||||||||||||||||   |||| ||||||| |||| |||| ||||||||||| ||  ||||||| |||  |||  |||||||||||||||    
T  11207434 ttttaagtaaaaacaagtgatgtagcaaaattataggttgatataccatatatgaacctccaaataatttaagattcatctcataaatcaaatga 11207528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 22759030 - 22759071
Alignment:
Q  316 ttttgtattgaattgagatatgactcgcatgtgtcgtaagat 357  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  22759030 ttttgtatcgaattgagatatgactcgcatgtatcgtaagat 22759071  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 35578290 - 35578349
Alignment:
Q  21 aacatttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatga 80  Q
    |||||||| ||||||||||| |||||| | || |||||||||||| ||||||||| ||||    
T  35578290 aacattttaaagtaaaaacacgtgacataacaaaattataagttgatatatcatacatga 35578349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 42869270 - 42869167
Alignment:
Q  22 acatttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatgag 121  Q
    |||||||||| |||| | |||| ||| | || |||||||||||| ||||||||||| || ||||  ||||||| |||  | ||||||||||| ||||||     
T  42869270 acatttttaattaaagataagtaacatatcaaaattataagttgatatatcatatacgagcttctaaataattgaagttttaagtcataaatgaaatgat 42869171  T
Q  122 aaaa 125  Q
    ||||    
T  42869170 aaaa 42869167  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 11443446 - 11443406
Alignment:
Q  58 ataagttggtatatcatatatgaacttcagaataattcaag 98  Q
    ||||| || |||||||||||||||||||| |||||||||||    
T  11443446 ataagctgatatatcatatatgaacttcaaaataattcaag 11443406  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 217
Target Start/End: Complemental strand, 5912737 - 5912577
Alignment:
Q  54 aattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatgagaaaacaatagtggttggttagttatacaaagt 153  Q
    ||||||||| || ||||| |||||||||| ||| |||||||||||  |||| | ||| ||||||||| |||| || || |||||    ||||||||||||    
T  5912737 aattataagatgatatattatatatgaacctcaaaataattcaagattcaaattatatatcaaatgacaaaagaaaaggggttg----gttatacaaagt 5912642  T
Q  154 tgacaaa--aggggctagctgcactaagtttaggtagtgatttatttgaatgaatcatggattcat 217  Q
    |||||||  || ||||  || |||||||||||||||||||||   |||||||||||| ||||||||    
T  5912641 tgacaaaatagtggctgactacactaagtttaggtagtgattcgattgaatgaatca-ggattcat 5912577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 24188211 - 24188092
Alignment:
Q  21 aacatttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatga 120  Q
    ||||||||| | ||||||||||||||| | || |||||||||||| ||||||||||| |||  ||| ||| | ||||| ||||| |  ||||||||||||    
T  24188211 aacatttttgaataaaaacaagtgacacaacaaaattataagttgatatatcatataagaaactcaaaat-agtcaagactcaaatattaaatcaaatga 24188113  T
Q  121 gaaaacaatagtggttggtta 141  Q
     |||  || ||||||||||||    
T  24188112 aaaagaaaaagtggttggtta 24188092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 5958740 - 5958671
Alignment:
Q  25 tttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataatt 94  Q
    ||||||||||||||||| |||||||||| |||||||| ||| ||||| |||||  ||| ||| |||||||    
T  5958740 tttttaagtaaaaacaaatgacaaagcaaaattataaattgatatattatatacaaacctcaaaataatt 5958671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 38868107 - 38868019
Alignment:
Q  32 gtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatga 120  Q
    ||||||||||||||   |||  |||||||||||| ||||||||| |||||  ||| |||||||||||   |||||| ||||||||||||    
T  38868107 gtaaaaacaagtgatgtagccaaattataagttgatatatcatacatgaatctcaaaataattcaagaaccaagtcctaaatcaaatga 38868019  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 48433161 - 48433257
Alignment:
Q  24 atttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatga 120  Q
    |||| ||||||||||||||||||   ||| || ||||||||| ||||||||||| |||| ||| || ||||||||  |||||||| |||||||||||    
T  48433161 atttctaagtaaaaacaagtgacttggcaaaaatataagttgatatatcatatacgaacctcaaaagaattcaagattcaagtcaaaaatcaaatga 48433257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 48433316 - 48433417
Alignment:
Q  24 atttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatgagaa 123  Q
    |||| ||||||||||||||||||   ||| || ||||||| | ||||||||||| |||| ||| || ||||||||  |||||||| ||||||||||| ||    
T  48433316 atttctaagtaaaaacaagtgacttggcaaaaatataagtagatatatcatatacgaacctcaaaagaattcaagattcaagtcaaaaatcaaatgacaa 48433415  T
Q  124 aa 125  Q
    ||    
T  48433416 aa 48433417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 33008504 - 33008580
Alignment:
Q  22 acatttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaag 98  Q
    ||||||| |||||||||||||||||| | |  |  ||||||||| |||||||||||||||| ||  |||||||||||    
T  33008504 acattttaaagtaaaaacaagtgacataactaatatataagttgatatatcatatatgaacctcgaaataattcaag 33008580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 33580774 - 33580861
Alignment:
Q  33 taaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattca--aggctcaagtcataaatcaaat 118  Q
    |||||||||| |||| | || ||||||||| |||||| |||||||||||||||| ||| |||||  ||  ||||||||||||||||||    
T  33580774 taaaaacaagggacataacaaaattataagctggtatgtcatatatgaacttcaaaatgattcaagagattcaagtcataaatcaaat 33580861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 6421691 - 6421573
Alignment:
Q  23 catttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatgaga 122  Q
    ||||||||||||||||||||||||| | || ||| |||||  | || || |||||| ||||||| ||| ||||  |  | | ||||||||||||||||      
T  6421691 catttttaagtaaaaacaagtgacataacaaaataataaggcgatacattatatataaacttcaaaatgattcttgattgatgtcataaatcaaatgacc 6421592  T
Q  123 aaacaatagtggttggtta 141  Q
    ||| || ||||||||||||    
T  6421591 aaagaaaagtggttggtta 6421573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 6349552 - 6349483
Alignment:
Q  70 atcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatgagaaaacaatagtggttggt 139  Q
    ||||| ||||||| ||| |||||| || |  |||||||||||||||||||| |||| || ||||||||||    
T  6349552 atcatgtatgaacatcaaaataatacatgattcaagtcataaatcaaatgaaaaaagaaaagtggttggt 6349483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 52750277 - 52750110
Alignment:
Q  67 tatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatgagaaaacaatagtggttggttagttatacaaagttgac-----aaaa 161  Q
    |||||||||||||||| ||| | |||||||||  |||||| | | ||||||||| |||| || ||||||||    |||||||||| |||||     ||||    
T  52750277 tatatcatatatgaacctcaaactaattcaagattcaagttaaatatcaaatgacaaaagaaaagtggttg----gttatacaaaattgacaagtaaaaa 52750182  T
Q  162 ggggctagctgcactaagtttaggtagtgatttatttgaatgaatcatggattcatgattcatcatagtgaattg 236  Q
    | || | ||| ||||||||||| ||||||||| ||| |||||||||| |   ||| ||||||||| |||||||||    
T  52750181 gtggttggctacactaagtttatgtagtgattcattagaatgaatcagg---tcacgattcatcacagtgaattg 52750110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 20505263 - 20505163
Alignment:
Q  23 catttttaagtaaaaacaagtgacaaagcagaattataagttggtat---atcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatg 119  Q
    ||||||||| ||||| ||||||||||| || | |||||||||| |||   ||||||||||||| |||  ||||||||||  | |||| ||| ||||||||    
T  20505263 catttttaattaaaaccaagtgacaaaacaaagttataagttgatatatcatcatatatgaacctcaatataattcaagattaaagttatatatcaaatg 20505164  T
Q  120 a 120  Q
    |    
T  20505163 a 20505163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 3727335 - 3727278
Alignment:
Q  25 tttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaac 82  Q
    |||| |||||||||||||||||| |||  ||||||||| || ||||||||||| ||||    
T  3727335 ttttaaagtaaaaacaagtgacatagctaaattataagctgatatatcatatacgaac 3727278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 32471704 - 32471636
Alignment:
Q  40 aagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtca 108  Q
    |||||||| | || |||||||||||| |||| ||||||||||  ||| |||||||||||  ||||||||    
T  32471704 aagtgacataacaaaattataagttgatatagcatatatgaatctcaaaataattcaagattcaagtca 32471636  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 7379745 - 7379647
Alignment:
Q  22 acatttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatga 120  Q
    ||||||||| |||||||| |||||||   || |||  |||| ||||||||||||||||||| ||   ||||||| ||  ||||||||||||||||||||    
T  7379745 acatttttatgtaaaaaccagtgacacgtcaaaatcgtaagctggtatatcatatatgaacctctatataattctagattcaagtcataaatcaaatga 7379647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 4433071 - 4433135
Alignment:
Q  54 aattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaat 118  Q
    |||||| |||||| ||  ||||||||||| ||| |||||||||||  ||||||||||||||||||    
T  4433071 aattattagttggcatgccatatatgaacctcaaaataattcaagattcaagtcataaatcaaat 4433135  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 30603516 - 30603465
Alignment:
Q  24 atttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcata 75  Q
    |||||||||||||||||| ||||| |||| || ||||||||| |||||||||    
T  30603516 atttttaagtaaaaacaaatgacatagcaaaactataagttgatatatcata 30603465  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 32847512 - 32847577
Alignment:
Q  54 aattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatg 119  Q
    ||||||||| || |||||||||||||| | ||| |||||||||||  |||||||||| | ||||||    
T  32847512 aattataagctgatatatcatatatgagcctcaaaataattcaagattcaagtcatataacaaatg 32847577  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 15396103 - 15396196
Alignment:
Q  26 ttttaagtaaaaacaagtgacaaagcagaattataagttggtatatcatatatgaacttcagaataattcaaggctcaagtcataaatcaaatga 120  Q
    |||||||||||||||| || || |||| || | |||| || ||||||||||| |||| ||| |||||||||| | |||| || ||||||||||||    
T  15396103 ttttaagtaaaaacaaatggcatagcaaaactgtaagctgatatatcatata-gaacctcaaaataattcaatgttcaaatcgtaaatcaaatga 15396196  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 10953499 - 10953536
Alignment:
Q  88 aataattcaaggctcaagtcataaatcaaatgagaaaa 125  Q
    |||||||||||  |||||||||||||||||||||||||    
T  10953499 aataattcaagattcaagtcataaatcaaatgagaaaa 10953536  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 14990878 - 14990911
Alignment:
Q  158 aaaaggggctagctgcactaagtttaggtagtga 191  Q
    ||||| ||||||||||||||||||||||||||||    
T  14990878 aaaagtggctagctgcactaagtttaggtagtga 14990911  T

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