View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12753_low_3 (Length: 403)
Name: NF12753_low_3
Description: NF12753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12753_low_3 |
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| [»] scaffold0085 (2 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 46237 - 46007
Alignment:
| Q |
1 |
cgaagaaatcgaagctcatattcaggtcacacgcgagatcgaatccagcatcgtcaaatgcgaagagatggagaatcattttgcaactaaggaagctgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46237 |
cgaagaaatcgaagctcatattcaggtcacacgcgagatcgaatccagcatcgtcagatgcgaagagatggagaatcattttgcaactaaggaagctgaa |
46138 |
T |
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| Q |
101 |
ttgatcgaaatctgtggcgttttgcagttcgacactgttggatttgtaactgtcgctggttagaattattcacttcgcatttcatcttcatagtttaact |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46137 |
ttgatcggaatctgtggcgttttgcagttcgacactgttggatttgtaactgtcgctggttagaattattcacttcgcatttcatcttcatagtttaact |
46038 |
T |
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| Q |
201 |
tatatcattgattattatgatttgttaatta |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
46037 |
tatatcattgattattatgatttgttaatta |
46007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 201 - 403
Target Start/End: Complemental strand, 45949 - 45747
Alignment:
| Q |
201 |
tatatcattgattattatgatttgttaattacatttatagcatcctttagagcaccaaaacttctaatgaagtcatgtctggtatttgacatctgttagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45949 |
tatatcattgattattatgatttgttaattacatttatagcatcctttagagcaccaaaacttctaatgaagtcatgtctggtatttgacatctgttagt |
45850 |
T |
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| Q |
301 |
gtctaacatcaacacaacactgacaggtataattacattttattatgctannnnnnnaaattattatcggtctcgatgtgtcactatgtgtcactgttgt |
400 |
Q |
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| T |
45849 |
gtctaacatcaacacaacactgacaggtataattacattttattatgctatttttttaaattattatcggtctcgatgtgtcactatgtgtcactgttgt |
45750 |
T |
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| Q |
401 |
gtt |
403 |
Q |
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||| |
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| T |
45749 |
gtt |
45747 |
T |
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