View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12753_low_5 (Length: 377)

Name: NF12753_low_5
Description: NF12753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12753_low_5
NF12753_low_5
[»] chr6 (3 HSPs)
chr6 (15-377)||(5452508-5452870)
chr6 (24-377)||(5379011-5379364)
chr6 (15-377)||(5441757-5442118)


Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 377
Target Start/End: Original strand, 5452508 - 5452870
Alignment:
Q  15 agatataacaattttcttagcaaactctattataagtagcacacctattgttaggtccacctccattttgagaaggcaagcaattacgataggcttgatt 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5452508 agatataacaattttcttagcaaactctattataagtaccacacctattgttaggtccacctccattttgagaaggcaagcaagtacgataggcttgatt 5452607  T
Q  115 tgtaggacacttaacagcagcaccattgctgttaccatgtctacctgtttgtgtttgactcaaatccaaaagcattcttgctgcatgagaactcatagaa 214  Q
    | |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5452608 tataggacacttaacagcagcaccattgttgttaccatttctacctgtttgtgtttgactcaaatccaaaagcattcttgctgcatgagaactcatagaa 5452707  T
Q  215 aattcttctgattccaaatcattgttgatgagacaatcctctgaggtacaacccttaatcttcaatgatgttgttttggatagatgtaattggatcaata 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5452708 aattcttctgattccaaatcattgttgatgagacaatcctctgaggtacaaccctttatcttcaatgatgttgttttggatagatgtaattggatcaata 5452807  T
Q  315 aaataaggaacaatagtgaaacacccttgttcatcatttccttctttggaactcaactttttc 377  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5452808 agataaggaacaatagtgaaacacccttgttcatcatttccttctttggaactcaactttttc 5452870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 24 - 377
Target Start/End: Original strand, 5379011 - 5379364
Alignment:
Q  24 aattttcttagcaaactctattataagtagcacacctattgttaggtccacctccattttgagaaggcaagcaattacgataggcttgatttgtaggaca 123  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||  | | |||||    
T  5379011 aattttcttagcaaactctattgtaagtaccacacctattgttaggtccacctccattttgagaaggcaagcaagtacgatagccttgaactattggaca 5379110  T
Q  124 cttaacagcagcaccattgctgttaccatgtctacctgtttgtgtttgactcaaatccaaaagcattcttgctgcatgagaactcatagaaaattcttct 223  Q
    || ||||||| |||||||| ||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||     
T  5379111 ctaaacagcaacaccattgttgttaccagttctaccagtttgtgtttgactcaaatccaaaagcattcttgctgcatgagaatgcatagaaaattcttcc 5379210  T
Q  224 gattccaaatcattgttgatgagacaatcctctgaggtacaacccttaatcttcaatgatgttgttttggatagatgtaattggatcaataaaataagga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||  ||||||||||||||||||||| ||| |||    
T  5379211 gattccaaatcattgttgatgagacaatcctctgaggtacaaccctttatcttcaatgaagttgttttgcttagatgtaattggatcaataagatatgga 5379310  T
Q  324 acaatagtgaaacacccttgttcatcatttccttctttggaactcaactttttc 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5379311 acaatagtgaaacacccttgttcatcatttccttctttggaactcaactttttc 5379364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 377
Target Start/End: Original strand, 5441757 - 5442118
Alignment:
Q  15 agatataacaattttcttagcaaactctattataagtagcacacctattgttaggtccacctccattttgagaaggcaagcaattacgataggcttgatt 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  ||    
T  5441757 agatataacaattttcttagcaaactctattataagtaccacacctattgttaggtccacctccattttgagaaggcaagcaagtacgatagtctttttt 5441856  T
Q  115 tgtaggacacttaacagcagcaccattgctgttaccatgtctacctgtttgtgtttgactcaaatccaaaagcattcttgctgcatgagaactcatagaa 214  Q
    | |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5441857 tataggacacttaacagcagcaccattgttgttaccatttctacctgtttgtgtttgactcaaatccaaaagcattcttgctgcatgagaactcatagaa 5441956  T
Q  215 aattcttctgattccaaatcattgttgatgagacaatcctctgaggtacaacccttaatcttcaatgatgttgttttggatagatg---taattggatca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||   |||| ||||||    
T  5441957 aattcttctgattccaaatcattgttgatgagacaatcctctgaggtacaaccctttatcttcaatgatgttgttttgcttagatgtaataatcggatca 5442056  T
Q  312 ataaaataaggaacaatagtgaaacacccttgttcatcatttccttctttggaactcaactttttc 377  Q
    |||  | ||||| ||||||||||||| ||||||   |||||| ||| ||||||||| |||||||||    
T  5442057 atatgacaaggagcaatagtgaaaca-ccttgt---tcattttcttatttggaactgaactttttc 5442118  T

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