View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12753_low_8 (Length: 255)
Name: NF12753_low_8
Description: NF12753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12753_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 5170204 - 5170070
Alignment:
| Q |
116 |
atttgaaaatataatattgtgaaggacaaaggtacagtgaaaatataccgctcctccaattctttgaagcggctagattttaactcaagttccttcagtt |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5170204 |
atttgaaaatataatattgttaaggacaaaggtacagtgaaaatataccgctcctccaattctttgaagcgggtagattttaactcaagttccttcagtt |
5170105 |
T |
|
| Q |
216 |
cagcatttacttcagcattctgtctctctgcttct |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
5170104 |
cagcatttacttcagcattctgtctctctgtttct |
5170070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 5170316 - 5170221
Alignment:
| Q |
37 |
tgattcatagaaagtttattttgggggttgaggggtgtggttaaggatttttcagtatcttaaactatggcattgttttatttgaaaatataatat |
132 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5170316 |
tgattcatagaaagtttgttttgggggttgaggggtgaggttagggatttttcagtatcttgaactatggcattgttttatttgaaaatataatat |
5170221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University