View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12754_high_2 (Length: 595)

Name: NF12754_high_2
Description: NF12754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12754_high_2
NF12754_high_2
[»] chr4 (15 HSPs)
chr4 (20-511)||(25800519-25801017)
chr4 (511-581)||(38694803-38694874)
chr4 (511-581)||(11417812-11417884)
chr4 (511-581)||(38143589-38143660)
chr4 (511-581)||(9939247-9939318)
chr4 (543-581)||(10424248-10424286)
chr4 (543-581)||(21166260-21166298)
chr4 (543-581)||(26610471-26610509)
chr4 (543-581)||(29651217-29651255)
chr4 (543-581)||(31835273-31835311)
chr4 (543-581)||(45230490-45230528)
chr4 (543-581)||(45235845-45235883)
chr4 (543-581)||(10424944-10424982)
chr4 (543-581)||(21165572-21165610)
chr4 (543-581)||(31836344-31836382)
[»] scaffold0026 (2 HSPs)
scaffold0026 (176-511)||(113808-114150)
scaffold0026 (20-184)||(113460-113624)
[»] chr6 (9 HSPs)
chr6 (511-581)||(3542939-3543010)
chr6 (511-581)||(33018292-33018363)
chr6 (511-562)||(7193473-7193525)
chr6 (543-581)||(15083203-15083241)
chr6 (543-581)||(15082522-15082560)
chr6 (543-581)||(22580060-22580098)
chr6 (543-581)||(22587195-22587233)
chr6 (543-581)||(33479822-33479860)
chr6 (543-581)||(33480513-33480551)
[»] chr2 (3 HSPs)
chr2 (511-581)||(38834512-38834583)
chr2 (543-581)||(21471142-21471180)
chr2 (543-581)||(21471839-21471877)
[»] chr8 (10 HSPs)
chr8 (511-581)||(34992116-34992187)
chr8 (543-581)||(32536833-32536871)
chr8 (543-581)||(37639836-37639874)
chr8 (543-581)||(37640482-37640520)
chr8 (543-581)||(38023749-38023787)
chr8 (543-581)||(38024416-38024454)
chr8 (543-581)||(41859981-41860019)
chr8 (543-581)||(32537373-32537411)
chr8 (543-581)||(41859435-41859473)
chr8 (511-543)||(38024445-38024477)
[»] chr3 (16 HSPs)
chr3 (511-581)||(19132664-19132735)
chr3 (523-581)||(32490060-32490118)
chr3 (543-581)||(3971117-3971155)
chr3 (543-581)||(3998053-3998091)
chr3 (543-581)||(36750323-36750361)
chr3 (543-581)||(38923550-38923588)
chr3 (543-581)||(41755624-41755662)
chr3 (543-581)||(41756317-41756355)
chr3 (543-581)||(44686379-44686417)
chr3 (543-581)||(45242191-45242229)
chr3 (543-581)||(45242872-45242910)
chr3 (543-581)||(52492011-52492049)
chr3 (547-581)||(3971791-3971825)
chr3 (543-581)||(3998726-3998764)
chr3 (543-581)||(38922868-38922906)
chr3 (511-543)||(36750352-36750384)
[»] chr1 (13 HSPs)
chr1 (511-581)||(23440741-23440812)
chr1 (511-581)||(43737854-43737925)
chr1 (543-581)||(6076753-6076791)
chr1 (543-581)||(38931131-38931169)
chr1 (543-581)||(51975112-51975150)
chr1 (546-581)||(9948120-9948155)
chr1 (543-581)||(38930437-38930475)
chr1 (543-581)||(48971830-48971868)
chr1 (543-581)||(48972330-48972368)
chr1 (543-581)||(51974562-51974600)
chr1 (513-541)||(193952-193980)
chr1 (546-578)||(16271036-16271068)
chr1 (511-543)||(23440718-23440750)
[»] chr7 (6 HSPs)
chr7 (511-581)||(17145748-17145819)
chr7 (543-581)||(668304-668342)
chr7 (543-581)||(668988-669026)
chr7 (543-581)||(37864192-37864230)
chr7 (543-581)||(38072023-38072061)
chr7 (549-581)||(4261487-4261519)
[»] chr5 (7 HSPs)
chr5 (511-581)||(8040320-8040391)
chr5 (511-581)||(36626506-36626577)
chr5 (543-581)||(686541-686579)
chr5 (543-581)||(687233-687271)
chr5 (543-581)||(15183902-15183940)
chr5 (543-581)||(15183214-15183252)
chr5 (516-544)||(12190072-12190100)
[»] scaffold0311 (1 HSPs)
scaffold0311 (543-581)||(44-82)
[»] scaffold0041 (1 HSPs)
scaffold0041 (543-581)||(27498-27536)


Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 20 - 511
Target Start/End: Complemental strand, 25801017 - 25800519
Alignment:
Q  20 tcaagataatactgcaattttaggtatttgattgacgaatagcatctaccaagttgacatgcatttgaagtatttggcaatattttgatgtttgaataat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25801017 tcaagataatactgcaattttaggtatttgattgacgaatagcatctaccaagttgacatgcatttgaagtatttggcaatattttgatgtttgaataat 25800918  T
Q  120 gtggtacagataaattcggtattttatttgaaaagatgttttcaatacgcaaagaataattggatatacatgtttaattacattcgttaagtttaaaact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25800917 gtggtacagataaattcggtattttatttgaaaagatgttttcaatacgcaaagaataattggatatacatgtttaattacattcgttaagtttaaaact 25800818  T
Q  220 aaggaaggtaaataatcacatgcattcatcctccctaaagtcttttaagctttgaaacagacacaattcagggggatgaattccatttcataattagaag 319  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25800817 aaggaaggtaaataatcacatgcattcatcctccttaaagtcttttaagttttgaaacagacacaattcagggggatgaattccatttcataattagtag 25800718  T
Q  320 tttgag-----------aactatttgttggagaccgtatttatctagacaaatttaataaatattttttattttgcttttggacttatgaccaacacata 408  Q
    ||||||           ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||  |    ||||||||||||    
T  25800717 tttgagaattattggttaactatttgttggagaccgtatttatctagacaaaattaataaatgttttttattttgtttttgacc----gaccaacacata 25800622  T
Q  409 ctcatataaatgcacacaactcgagattctatatgaaatgtcctcacactcaaaccactaggttgtaataatagagacaaattaattttaaatttaaaat 508  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  25800621 ctcatataaatgcacacaactcgagatttcatatgaaatatcctcacactcaaaccactaggttgtaataatagagacaaattaattcaaaatttaaaat 25800522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 511 - 581
Target Start/End: Original strand, 38694803 - 38694874
Alignment:
Q  511 accactagattatttt-ttatattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38694803 accactagattatttttttatattatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagat 38694874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 511 - 581
Target Start/End: Complemental strand, 11417884 - 11417812
Alignment:
Q  511 accactagattatttttt--atattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11417884 accactagattattttttttatattatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagat 11417812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 511 - 581
Target Start/End: Original strand, 38143589 - 38143660
Alignment:
Q  511 accactagattatttt-ttatattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  38143589 accactagattatttttttatattatctttcacatgggtgtgtgaggacatgaaagagagagtgtgaaagat 38143660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 511 - 581
Target Start/End: Complemental strand, 9939318 - 9939247
Alignment:
Q  511 accactagattatttttt-atattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||| ||||||||||    
T  9939318 accactatattatttttttatattatctttcacatgggtgtgtggggatatgaaagagagaatgtgaaagat 9939247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 10424286 - 10424248
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  10424286 atgggtgtgtggggacatgaaagagagagtgtgaaagat 10424248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 21166260 - 21166298
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  21166260 atgggtgtgtggggacatgaaagagagagtgtgaaagat 21166298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 26610509 - 26610471
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  26610509 atgggtgtgtggggacatgaaagagagagtgtgaaagat 26610471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 29651217 - 29651255
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  29651217 atgggtgtgtggggacatgaaagagagagtgtgaaagat 29651255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 31835311 - 31835273
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  31835311 atgggtgtgtggggacatgaaagagagagtgtgaaagat 31835273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 45230528 - 45230490
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  45230528 atgggtgtgtggggacatgaaagagagagtgtgaaagat 45230490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 45235845 - 45235883
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  45235845 atgggtgtgtggggacatgaaagagagagtgtgaaagat 45235883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 10424944 - 10424982
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  10424944 atgggtgtgaggggacatgaaagagagagtgtgaaagat 10424982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 21165610 - 21165572
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  21165610 atgggtgtgtggggacatgaaagagagactgtgaaagat 21165572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 31836344 - 31836382
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  31836344 atgggtgtgtgggggcataaaagagagagtgtgaaagat 31836382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 176 - 511
Target Start/End: Original strand, 113808 - 114150
Alignment:
Q  176 taattggatatacatgtttaattacattcgttaagtttaaaactaaggaaggtaaataatcacatgcattcatcctccctaaagtcttttaagctttgaa 275  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  113808 taattggatatacatgtttaattacattcgttaagtttaaagctaaggaaggtaaataatcacatgcattcatcctccctgaagtcttttaagttttgaa 113907  T
Q  276 acagacacaattcagggggatgaattccatttcataattagaagtttgag-----------aactatttgttggagaccgtatttatctagacaaattta 364  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||           ||||||||||||||||||||||||||||||||||| |||    
T  113908 acagacacaattcaaggggatgaattccatttcataattagtagtttgagaattattggttaactatttgttggagaccgtatttatctagacaaaatta 114007  T
Q  365 ataaatattttttattttgcttttggacttatgaccaacacatactcatataaatgcacacaactcgagattctatatgaaatgtcctcacactcaaacc 464  Q
    |||||| |||||||||||| |||| |||   ||||||||||||||||||||||| |||||||||||||||||| |||| |||| ||||||||||||||||    
T  114008 ataaatgttttttattttg-tttttgac---tgaccaacacatactcatataaacgcacacaactcgagattccatatcaaatatcctcacactcaaacc 114103  T
Q  465 actaggttgtaataatagagacaaattaattttaaatttaaaattca 511  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||    
T  114104 actaggttgtaataatagagacaaattaattcaaaatttaaaattca 114150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 113460 - 113624
Alignment:
Q  20 tcaagataatactgcaattttaggtatttgattgacgaatagcatctaccaagttgacatgcatttgaagtatttggcaatattttgatgtttgaataat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  113460 tcaagataatactgcaattttaggtatttgattgacgaatagcatctaccaagttgacatgcatttgaagtatttggcaatattttgatgtttgaatgat 113559  T
Q  120 gtggtacagataaattcggtattttatttgaaaagatgttttcaatacgcaaagaataattggat 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  113560 gtggtacagataaattcggtattttatttgaaaagatgttttcaatacgcaaagaataattggat 113624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 511 - 581
Target Start/End: Complemental strand, 3543010 - 3542939
Alignment:
Q  511 accactagattatttttt-atattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3543010 accactagattatttttttatattatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagat 3542939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 511 - 581
Target Start/End: Complemental strand, 33018363 - 33018292
Alignment:
Q  511 accactagattatttttt-atattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33018363 accactagattatttttttatactatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagat 33018292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 7193525 - 7193473
Alignment:
Q  511 accactagattatttttt-atattatctttcacatgggtgtgtggggtcatga 562  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  7193525 accactagattatttttttatattatctttcacatgggtgtgtggggacatga 7193473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 15083203 - 15083241
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15083203 atgggtgtgtggggacatgaaagagagagtgtgaaagat 15083241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 15082560 - 15082522
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  15082560 atgggtgtgtagggacatgaaagagagagtgtgaaagat 15082522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 22580098 - 22580060
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  22580098 atgggtgtgtagggacatgaaagagagagtgtgaaagat 22580060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 22587195 - 22587233
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| || |||||||||||||||||||||    
T  22587195 atgggtgtgtggggacaggaaagagagagtgtgaaagat 22587233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 33479860 - 33479822
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  33479860 atgggtgtgtggggacatgaaatagagagtgtgaaagat 33479822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 33480513 - 33480551
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  33480513 atgggtgtgtgggaacatgaaagagagagtgtgaaagat 33480551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 511 - 581
Target Start/End: Complemental strand, 38834583 - 38834512
Alignment:
Q  511 accactagattatttttt-atattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38834583 accactagattatttttttatattatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagat 38834512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 21471180 - 21471142
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  21471180 atgggtgtgtggggacatgaaagagagagtgtgaaagat 21471142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 21471839 - 21471877
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  21471839 atgggtgtgtggggacatgaaagagagagtgtgaaagat 21471877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 511 - 581
Target Start/End: Original strand, 34992116 - 34992187
Alignment:
Q  511 accactagattatttt-ttatattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34992116 accactaaattatttttttatattatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagat 34992187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 32536871 - 32536833
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  32536871 atgggtgtgtggggacatgaaagagagagtgtgaaagat 32536833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 37639874 - 37639836
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  37639874 atgggtgtgtggggacatgaaagagagagtgtgaaagat 37639836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 37640482 - 37640520
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  37640482 atgggtgtgtggggacatgaaagagagagtgtgaaagat 37640520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 38023787 - 38023749
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  38023787 atgggtgtgtggggacatgaaagagagagtgtgaaagat 38023749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 38024416 - 38024454
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  38024416 atgggtgtgtggggacatgaaagagagagtgtgaaagat 38024454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 41859981 - 41860019
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  41859981 atgggtgtgtggggacatgaaagagagagtgtgaaagat 41860019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 32537373 - 32537411
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  32537373 atgggtgtgtggggacatgaaagagagagtgcgaaagat 32537411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 41859473 - 41859435
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  41859473 atgggtgtgtggggatatgaaagagagagtgtgaaagat 41859435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 543
Target Start/End: Complemental strand, 38024477 - 38024445
Alignment:
Q  511 accactagattattttttatattatctttcaca 543  Q
    ||||||||||||||||||||| |||||||||||    
T  38024477 accactagattattttttatactatctttcaca 38024445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 511 - 581
Target Start/End: Original strand, 19132664 - 19132735
Alignment:
Q  511 accactagattatttt-ttatattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  19132664 accactagattatttttttatattatctttcacatgggtgtgtggggacatgaaagagagaatgtgaaagat 19132735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 523 - 581
Target Start/End: Original strand, 32490060 - 32490118
Alignment:
Q  523 ttttttatattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||    
T  32490060 ttttttatactatctttcacatgggtgtgtggggacatgaaagagggagtgtgaaagat 32490118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 3971155 - 3971117
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3971155 atgggtgtgtggggacatgaaagagagagtgtgaaagat 3971117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 3998091 - 3998053
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3998091 atgggtgtgtggggacatgaaagagagagtgtgaaagat 3998053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 36750323 - 36750361
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  36750323 atgggtgtgtggggacatgaaagagagagtgtgaaagat 36750361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 38923550 - 38923588
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  38923550 atgggtgtgtggggacatgaaagagagagtgtgaaagat 38923588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 41755662 - 41755624
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  41755662 atgggtgtgtggggacatgaaagagagagtgtgaaagat 41755624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 41756317 - 41756355
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  41756317 atgggtgtgtggggacatgaaagagagagtgtgaaagat 41756355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 44686417 - 44686379
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  44686417 atgggtgtgtggggacatgaaagagagagtgtgaaagat 44686379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 45242229 - 45242191
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  45242229 atgggtgtgtggggacatgaaagagagagtgtgaaagat 45242191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 45242872 - 45242910
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  45242872 atgggtgtgtggggacatgaaagagagagtgtgaaagat 45242910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 52492049 - 52492011
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  52492049 atgggtgtgtggggacatgaaagagagagtgtgaaagat 52492011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 547 - 581
Target Start/End: Original strand, 3971791 - 3971825
Alignment:
Q  547 gtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||| ||||||||||||||||||||||||    
T  3971791 gtgtgtggggacatgaaagagagagtgtgaaagat 3971825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 3998726 - 3998764
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  3998726 atgggtgtgtggggacatgaaagagagagtgtaaaagat 3998764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 38922906 - 38922868
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  38922906 atgggtgtgtgaggacatgaaagagagagtgtgaaagat 38922868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 543
Target Start/End: Complemental strand, 36750384 - 36750352
Alignment:
Q  511 accactagattattttttatattatctttcaca 543  Q
    ||||||||||||||||||||| |||||||||||    
T  36750384 accactagattattttttatactatctttcaca 36750352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 511 - 581
Target Start/End: Complemental strand, 23440812 - 23440741
Alignment:
Q  511 accactagattatttttt-atattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23440812 accactagattatttttttatactatctttcacatgggtgtgtggggacatgaaagagagagtgtgaaagat 23440741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 511 - 581
Target Start/End: Complemental strand, 43737925 - 43737854
Alignment:
Q  511 accactagattatttttt-atattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  43737925 accactagattatttttttatattatctttcacatgggtgtgtggggacatcaaagagagaatgtgaaagat 43737854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 6076753 - 6076791
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6076753 atgggtgtgtggggacatgaaagagagagtgtgaaagat 6076791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 38931131 - 38931169
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  38931131 atgggtgtgtggggacatgaaagagagagtgtgaaagat 38931169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 51975112 - 51975150
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  51975112 atgggtgtgtggggacatgaaagagagagtgtgaaagat 51975150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 581
Target Start/End: Complemental strand, 9948155 - 9948120
Alignment:
Q  546 ggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9948155 ggtgtgtggggacatgaaagagagagtgtgaaagat 9948120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 38930475 - 38930437
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  38930475 atgggtgtgtgggaacatgaaagagagagtgtgaaagat 38930437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 48971868 - 48971830
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  48971868 atgggtgtgtgggaacatgaaagagagagtgtgaaagat 48971830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 48972330 - 48972368
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  48972330 atgggtgtgtggggatatgaaagagagagtgtgaaagat 48972368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 51974600 - 51974562
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  51974600 atgggtgtgtggggacatgaaagagagaatgtgaaagat 51974562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 541
Target Start/End: Original strand, 193952 - 193980
Alignment:
Q  513 cactagattattttttatattatctttca 541  Q
    |||||||||||||||||||||||||||||    
T  193952 cactagattattttttatattatctttca 193980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 546 - 578
Target Start/End: Original strand, 16271036 - 16271068
Alignment:
Q  546 ggtgtgtggggtcatgaaagagagagtgtgaaa 578  Q
    ||||||||||| |||||||||||||||||||||    
T  16271036 ggtgtgtggggacatgaaagagagagtgtgaaa 16271068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 543
Target Start/End: Original strand, 23440718 - 23440750
Alignment:
Q  511 accactagattattttttatattatctttcaca 543  Q
    ||||||||||||||||||||| |||||||||||    
T  23440718 accactagattattttttatactatctttcaca 23440750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 511 - 581
Target Start/End: Complemental strand, 17145819 - 17145748
Alignment:
Q  511 accactagattatttttt-atattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||||||| |||||||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  17145819 accactagattatttttttatattatctttcacatgaatgtgtggggacatgaaagagagagtgtgaaagat 17145748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 668342 - 668304
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  668342 atgggtgtgtggggacatgaaagagagagtgtgaaagat 668304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 668988 - 669026
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  668988 atgggtgtgtggggacatgaaagagagagtgtgaaagat 669026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 37864192 - 37864230
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  37864192 atgggtgtgtggggacatgaaagagagagtgtgaaagat 37864230  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 38072061 - 38072023
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  38072061 atgggtgtgtggggacatgaaagagagagtgtgaaagat 38072023  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 549 - 581
Target Start/End: Original strand, 4261487 - 4261519
Alignment:
Q  549 gtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||| ||||||||||||||||||||||||    
T  4261487 gtgtggggacatgaaagagagagtgtgaaagat 4261519  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 511 - 581
Target Start/End: Complemental strand, 8040391 - 8040320
Alignment:
Q  511 accactagattatttttt-atattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  8040391 accactagattatttttttatattatctttcacatggatgtgtagggacatgaaagagagagtgtgaaagat 8040320  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 511 - 581
Target Start/End: Complemental strand, 36626577 - 36626506
Alignment:
Q  511 accactagattat-tttttatattatctttcacatgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||||||||| ||||||||||    
T  36626577 accactagattatatttttatattatctttcacatgggtatgtggagacatgaaagagagaatgtgaaagat 36626506  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 686579 - 686541
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  686579 atgggtgtgtggggacatgaaagagagagtgtgaaagat 686541  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 687233 - 687271
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  687233 atgggtgtgtggggacatgaaagagagagtgtgaaagat 687271  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 15183902 - 15183940
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15183902 atgggtgtgtggggacatgaaagagagagtgtgaaagat 15183940  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 581
Target Start/End: Complemental strand, 15183252 - 15183214
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  15183252 atgggtgtgtggggacatgaaagtgagagtgtgaaagat 15183214  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 544
Target Start/End: Complemental strand, 12190100 - 12190072
Alignment:
Q  516 tagattattttttatattatctttcacat 544  Q
    |||||||||||||||||||||||||||||    
T  12190100 tagattattttttatattatctttcacat 12190072  T

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Target: scaffold0311 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 44 - 82
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  44 atgggtgtgtggggacatgaaagagagagtgtgaaagat 82  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 27498 - 27536
Alignment:
Q  543 atgggtgtgtggggtcatgaaagagagagtgtgaaagat 581  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  27498 atgggtgtgtggggacatgaaagagagagtgtgaaagat 27536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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