View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12754_high_4 (Length: 418)
Name: NF12754_high_4
Description: NF12754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12754_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 95 - 410
Target Start/End: Complemental strand, 4481211 - 4480896
Alignment:
| Q |
95 |
atgttatatgttttatttaattattgaatacttatgataaagaaaattctgccaatgatacagaaaatttgcttcctttctcatttgatgtatcgaaaat |
194 |
Q |
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| T |
4481211 |
atgttatatgttttatttaattattgaatacttatgataaagaaaattctgccaatgatacagaaaatttgcttcctttctcatttgatgtatcgaaaat |
4481112 |
T |
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| Q |
195 |
taatgatatggaatcttttgatattgatggttctcaaaggtttggttcttctacataatttgttgaatgctggtaaatttacctttcccttcctaatgat |
294 |
Q |
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| T |
4481111 |
taatgatatggaatcttttgatattgatggttctcaaaggtttggttcttctacataatttgttgaatgctggtaaatttacctttcccttcctaatgat |
4481012 |
T |
|
| Q |
295 |
acacaaaatttgcttactctctcatttgatgtctgaaaatatcatgatatagaattttttgatattcatggtttgcaaaatttatttggcatattctcaa |
394 |
Q |
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| T |
4481011 |
acacaaaattttcttactctctcatttgatgtctgaaaatatcatgatatagaattttttgatattcatggtttgcaaaatttatttggcatattctcaa |
4480912 |
T |
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| Q |
395 |
aggtttggttcttctc |
410 |
Q |
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| T |
4480911 |
aggtttggttcttctc |
4480896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 35538519 - 35538599
Alignment:
| Q |
300 |
aaatttgcttactctctcatttgatgtctgaaaatatcatgatatagaattttttgatattcatggtttgcaaaatttattt |
381 |
Q |
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| T |
35538519 |
aaatatgcttgctctctcaattgatgtctcaaaa-atcatgatatagaatattatgatgttcatggttcgcaaaattgattt |
35538599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 49826064 - 49826125
Alignment:
| Q |
227 |
ctcaaaggtttggttcttctacataatttgttgaatgctggtaaatttacctttcccttcct |
288 |
Q |
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| T |
49826064 |
ctcaaaggtttgcttcatctacataattggatgaatgctgataaatttactttgcccttcct |
49826125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 30339124 - 30339183
Alignment:
| Q |
126 |
ttatgataaagaaaattctgccaatgatacagaaaatttgcttcctttctcatttgatgt |
185 |
Q |
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| T |
30339124 |
ttatgatacaaaaaattctcccaatgatacacaaaatttggttgctttctcatttgatgt |
30339183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 26164130 - 26164042
Alignment:
| Q |
126 |
ttatgataaagaaaattctgccaatgatacagaaaatttgcttcctttctcatttgatgtatcgaaaattaatgatatggaatcttttg |
214 |
Q |
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| T |
26164130 |
ttatgatacaaaaaattctcccaatgagacacaaaatttggttgctttctcatttgatgtctcaacaattgatgatgtagaaacttttg |
26164042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 383
Target Start/End: Original strand, 37220975 - 37221069
Alignment:
| Q |
289 |
aatgatacacaaaatttgcttactctctcatttgatgtctgaaaatatcatgatatagaattttttgatattcatggtttgcaaaatttatttgg |
383 |
Q |
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|||||| || ||||| || || |||||||| ||||||| | |||| ||| |||| |||| | || |||||||||||||||| ||||||||||||| |
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| T |
37220975 |
aatgattcagaaaatatgtttgctctctcacttgatgtgtcaaaaaatcttgatttagagtcttatgatattcatggtttggaaaatttatttgg |
37221069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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