View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12754_low_5 (Length: 373)
Name: NF12754_low_5
Description: NF12754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12754_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 44017112 - 44016769
Alignment:
| Q |
18 |
agtgttacctctttgttcttttgcttactcttttttagcataacaaagatacaagtaataacttctctttcacctgatggacaagcacttctttctcttg |
117 |
Q |
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| T |
44017112 |
agtgttacctctttgttcttttgcttactcttttttagcataacaaagatacaagtaataacttctctttcacctgatggacaagcacttctttctcttg |
44017013 |
T |
|
| Q |
118 |
caacatcatcaccttctattctctcttcatggaacccttcaacatcaacaccatgttcatggaaaggcataacttgttcaccacaatctagagtgatttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44017012 |
caacatcatcaccttctattctctcttcatggaacccttcaacatcaacaccatgttcatggaaaggcataacttgttcaccacaatctagagtgatttc |
44016913 |
T |
|
| Q |
218 |
cctttctatccctgatactttcctcaacctcacttctttaccatctcaactatcctctttaacaatgcttcagcttcttaatctctcttcaaccaatctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44016912 |
cctttctatccctgatactttcctcaacctcacttctttaccatctcaactatcctctttaacaatgcttcagcttcttaatctctcttcaaccaatctc |
44016813 |
T |
|
| Q |
318 |
tctggctctatcccaccttcttttggtcaactctcccatcttca |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44016812 |
tctggctctatcccaccttcttttggtcaactctcccatcttca |
44016769 |
T |
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