View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12754_low_6 (Length: 251)
Name: NF12754_low_6
Description: NF12754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12754_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 40616835 - 40617053
Alignment:
| Q |
9 |
agaagcaaaggaccaacaaaatgacgaaataacacacacaagcttaattttaccttatgcaaattaagcttagtcttattaattatatatattagccact |
108 |
Q |
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| T |
40616835 |
agaaacaaaggaccaacaaaatgacgaaataacacacacaagcttaattttaccttatgcaaattaagcttagtcttattaattatatatattagccact |
40616934 |
T |
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| Q |
109 |
acttgagtattctttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaa |
208 |
Q |
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| T |
40616935 |
acttgagtattctttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaa |
40617034 |
T |
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| Q |
209 |
tattgttacgacaaggtgg |
227 |
Q |
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| T |
40617035 |
tattgttacgacaaggtgg |
40617053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 40627646 - 40627764
Alignment:
| Q |
108 |
tacttgagtattctttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccaca |
207 |
Q |
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| T |
40627646 |
tacttgagtaattttt-aagccatagaccatgtaactggtactacaccatcatctgtattcaaccctaatgcattccacacagatacagatccatccaca |
40627744 |
T |
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| Q |
208 |
atattgttacgacaaggtgg |
227 |
Q |
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| T |
40627745 |
atattgttatgacaaggtgg |
40627764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 40610453 - 40610558
Alignment:
| Q |
122 |
ttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattgttacgaca |
221 |
Q |
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| T |
40610453 |
ttcaagctatagaccatgtaactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaatattgttacgaca |
40610552 |
T |
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| Q |
222 |
aggtgg |
227 |
Q |
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|||||| |
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| T |
40610553 |
aggtgg |
40610558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 40610364 - 40610406
Alignment:
| Q |
47 |
caagcttaattttaccttatgcaaattaagcttagtcttatta |
89 |
Q |
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| T |
40610364 |
caagcttaatttaaccttatgcaaattaagcttgttcttatta |
40610406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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