View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12755_high_1 (Length: 771)
Name: NF12755_high_1
Description: NF12755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12755_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 539 - 754
Target Start/End: Complemental strand, 41662019 - 41661804
Alignment:
| Q |
539 |
aatctgaagtatcaaagattaacattacaaaacacgagcctcggtttatccctaattgtagcagttcacacacgggtgggacacattgttttggagagat |
638 |
Q |
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| T |
41662019 |
aatctaaagtatcaaagattaacattacaaaacatgagcctcggtttatccctaattgcagcagttcacacacgggtgggacacattgttttggagagat |
41661920 |
T |
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| Q |
639 |
ccatgggttggtgagggtgtagtgctaaaagatatgtttgagattatttctcatcacatctgaagaagaggtcaaagtagtggatatgtgttgggaaaga |
738 |
Q |
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| T |
41661919 |
ccatgggttggtgagggtgtagtactaaaagatatgtatgagattatttatcatcacatctgaagaagaggtcaaagtagtggatatgtgttgggaaaga |
41661820 |
T |
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| Q |
739 |
gagggtagggtggaaa |
754 |
Q |
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| T |
41661819 |
gagggtagggtggaaa |
41661804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 416 - 510
Target Start/End: Original strand, 11233819 - 11233912
Alignment:
| Q |
416 |
acaatacccttcccttcaaacatccttgtcctcaaggattgaacaatcaaaagtatcatgtttacgaggcaaagttttccatttgattagaactt |
510 |
Q |
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| T |
11233819 |
acaataccctccccttcaaacatccctgtcctcaagga-tgaatgatcacaagttccatgtttaagaggcaaagctttccatctgattagaactt |
11233912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 418 - 534
Target Start/End: Complemental strand, 3666886 - 3666772
Alignment:
| Q |
418 |
aatacccttcccttcaaacatccttgtcctcaaggattgaacaatcaaaagtatcatgtttacgaggcaaagttttccatttgattagaactttagcatc |
517 |
Q |
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| T |
3666886 |
aataccctccctttcaaacatccttgtcctcaaggatg--acaatcacaagtgccatgtttaaaaggcaaagctttccatttgagtagaactttagcatc |
3666789 |
T |
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| Q |
518 |
tagaacatttcccctat |
534 |
Q |
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| T |
3666788 |
tcgaacatttcccctat |
3666772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 416 - 512
Target Start/End: Complemental strand, 22803014 - 22802919
Alignment:
| Q |
416 |
acaatacccttcccttcaaacatccttgtcctcaaggattgaacaatcaaaagtatcatgtttacgaggcaaagttttccatttgattagaacttta |
512 |
Q |
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| T |
22803014 |
acaataccctccccttcaaacatcctcgtcctcaaggat-gaataatcacaagtgccatgtttaagaggcaaagttttccatttgattagaacttta |
22802919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 416 - 512
Target Start/End: Complemental strand, 22869523 - 22869428
Alignment:
| Q |
416 |
acaatacccttcccttcaaacatccttgtcctcaaggattgaacaatcaaaagtatcatgtttacgaggcaaagttttccatttgattagaacttta |
512 |
Q |
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| T |
22869523 |
acaataccctccccttcaaacatcctcgtcctcaaggat-gaataatcacaagtgccatgtttaagaggcaaagttttccatttgattagaacttta |
22869428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 427 - 506
Target Start/End: Original strand, 1639266 - 1639344
Alignment:
| Q |
427 |
cccttcaaacatccttgtcctcaaggattgaacaatcaaaagtatcatgtttacgaggcaaagttttccatttgattaga |
506 |
Q |
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||||||||||||||||||||||||||| |||| | || |||||| |||| ||| |||| ||||| |||||||||| |||| |
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| T |
1639266 |
cccttcaaacatccttgtcctcaagga-tgaaaattccaaagtaccatgcttaggaggaaaagtcttccatttgagtaga |
1639344 |
T |
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