View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12755_high_10 (Length: 220)
Name: NF12755_high_10
Description: NF12755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12755_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 43056028 - 43056214
Alignment:
| Q |
15 |
aagaatattgctctttatttatttcccgagtatgaagggtaattctcatacatgttttacatcatgtcattgnnnnnnnnnnnnnnnnnnnnaaatctga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43056028 |
aagaatattgctctttatttatttcccgagtatgaagggtaattctcatacatgttttacatcatgtcattgtttttgtatttttattttttaaatctga |
43056127 |
T |
|
| Q |
115 |
tatatcgagataatatttcctctacagaccatctatggatgccttagacaacctgattgttgaagtcattcacgccgaagctgccct |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43056128 |
tatatcgagataatatttcctctacagaccatctatggatgccttagacaacctgattgttgaagtcattcacgccgaagctgccct |
43056214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University