View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12755_high_5 (Length: 373)
Name: NF12755_high_5
Description: NF12755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12755_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 2759116 - 2758784
Alignment:
| Q |
13 |
catcagcaattcacatgatttacaaagtttatttatttttagttcaacatacttcaaagtactatttaagaatatgtgaaagttaagagagatcatagag |
112 |
Q |
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| T |
2759116 |
catcagcaattcacatgatttacaaagtttattt---tttagttcaacatacttcaaagtactatttaagaatatgtgaaagttaagagagatcatagag |
2759020 |
T |
|
| Q |
113 |
agaccccctttcttagttgcatgaaaatgcacaaactcaacaaaaagagaattcaagtggacccnnnnnnnn-aacacataaagagtctcaaataacaaa |
211 |
Q |
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| T |
2759019 |
agaccccctttcttagttgcatgaaaatgcacaaactcaacaaaaagagaattcaagtggaccctttttttttaacacataaagagtctcaaataacaaa |
2758920 |
T |
|
| Q |
212 |
cttttctgattcattggccttttatgtttgtccatgctctcttcagtcttcaccctttctcacatttccctctttaaaatctttctcacacattctactt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2758919 |
cttttctgattcattggccttttatgtttgtccatgctctcttcagtcttcaccctttctcacatttccctctttaaaatctttctcacacattctactt |
2758820 |
T |
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| Q |
312 |
cattactttgtcctcccatttttcaatctatttcaa |
347 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2758819 |
cattactttgtcctcccatttttcaatctatttcaa |
2758784 |
T |
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