View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12755_low_10 (Length: 253)
Name: NF12755_low_10
Description: NF12755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12755_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 9242478 - 9242704
Alignment:
| Q |
21 |
atcataccaaaagtagcaaagcaaagttgaaggtatcgactataacgaacaccttgcttggattcgtgaagatggacgagcaaccataaggtataaagct |
120 |
Q |
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| T |
9242478 |
atcataccaaaagtaacaaagcagagttgaaggtatcgactataacgaacaccatccttggattcgtgaagatggacgagcaaccataaggtataaagct |
9242577 |
T |
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| Q |
121 |
gccatatgaatgctattgtcaaacttattattccccatgtcctgcaatcaatcacacacttgtctcatacacattaagagca--tatgtacatgtatgta |
218 |
Q |
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| T |
9242578 |
gccatatgaatgctattgtcaaacttattattccccatgtcctgcaaccaatcacacatttgtttcatcaatattaagagcatgtgtgtgtgtgtgtgta |
9242677 |
T |
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| Q |
219 |
agaaaatggttgaaaaaactttcttct |
245 |
Q |
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||||||||||||||||||||||||||| |
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| T |
9242678 |
agaaaatggttgaaaaaactttcttct |
9242704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 9256928 - 9257074
Alignment:
| Q |
24 |
ataccaaaagtagcaaagcaaagttgaaggtatcgactataacgaacaccttgcttg---gattcgtgaagatggacgagcaaccataaggtataaagct |
120 |
Q |
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||||| ||||| || |||||||| |||||||||||||| || |||| ||| | || | |||||||||||||||||||||||||||||||| ||||| | |
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| T |
9256928 |
ataccgaaagtggcgaagcaaagctgaaggtatcgactgtagcgaataccgttctcgacggattcgtgaagatggacgagcaaccataaggtgtaaagtt |
9257027 |
T |
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| Q |
121 |
gccatatgaatgctattgtcaaacttattattccccatgtcctgcaa |
167 |
Q |
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|||||||||||||||||||||| || | ||||||||||||||||||| |
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| T |
9257028 |
gccatatgaatgctattgtcaagctcaatattccccatgtcctgcaa |
9257074 |
T |
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