View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12755_low_3 (Length: 449)
Name: NF12755_low_3
Description: NF12755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12755_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 45705515 - 45705339
Alignment:
| Q |
1 |
aaaaaatggtacttacaaaaggtaaattgaggggaacatagaagatgatggatcacttagtgataatatagatagcatagataattccaggaagatagcc |
100 |
Q |
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| T |
45705515 |
aaaaaatggtacttacaaaaggtaaattgaggggaacatagaagatgatggatcacttagtgataatatagatagcatagataattccaggaagatagcc |
45705416 |
T |
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| Q |
101 |
aaaaagggtgagcaccaaacagatccagaactccacctatatttataacagaaaatcccaaacaattaattaagcat |
177 |
Q |
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| T |
45705415 |
aaaaagggtgagcaccaaacagatccagaactccacctatatttataacagaaaatcccaaacaattaattaagcat |
45705339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 241 - 367
Target Start/End: Complemental strand, 45705275 - 45705145
Alignment:
| Q |
241 |
agggttttacttacttccaaaccaaatttgaggaagacaccaagaggaggtaggaggatggaaagaatgatatcaacgaaggtagctgtgcccatttttt |
340 |
Q |
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| T |
45705275 |
agggttttacttacttccaaaccaaatttgaggaagacaccaagaggaggtaggaggatggaaagaatgatatcaacgaaggtagctgtgcccatttttt |
45705176 |
T |
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| Q |
341 |
gat----attttgcgtacaagttagaaggag |
367 |
Q |
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| T |
45705175 |
gatattaattttgcgtacaagttagaaggag |
45705145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 45717834 - 45717725
Alignment:
| Q |
41 |
gaagatgatggatcacttagtgataatatagatagcatagataattccaggaagatagccaaaaagggtgagcaccaaacagatccagaactccacctat |
140 |
Q |
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| T |
45717834 |
gaagatgatggatcacttagtgatagcatagatagcatagataattccaggaagataacccaaaatggtgagaatcaaacatatccaaaactcgacctgt |
45717735 |
T |
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| Q |
141 |
atttataaca |
150 |
Q |
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| T |
45717734 |
atttataaca |
45717725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 45746283 - 45746194
Alignment:
| Q |
51 |
gatcacttagtgataatatagatagcatagataattccaggaagatagccaaaaagggtgagcaccaaacagatccagaactccacctat |
140 |
Q |
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| T |
45746283 |
gatcacttggtaatagcatagatagcatagagaattccagggagatagccaaaaagggttagcaccaaacagagccagaactccacctat |
45746194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 45717627 - 45717551
Alignment:
| Q |
262 |
ccaaatttgaggaagacaccaagaggaggtaggaggatggaaagaatgatatcaacgaaggtagctgtgcccatttt |
338 |
Q |
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| T |
45717627 |
ccaaacttgaggaagacaccaagaggtggaaggatgatggcaagaataatatcgatgcatgtagctgtgcccatttt |
45717551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 45746090 - 45746014
Alignment:
| Q |
262 |
ccaaatttgaggaagacaccaagaggaggtaggaggatggaaagaatgatatcaacgaaggtagctgtgcccatttt |
338 |
Q |
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| T |
45746090 |
ccaaacttgaggaagacaccgagaggagggaggatgatggcaacaatgatatcgatgcatgtagctgtgcccatttt |
45746014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 397
Target Start/End: Complemental strand, 45705127 - 45705096
Alignment:
| Q |
366 |
agtgatacttaaggacactttagtttacacgc |
397 |
Q |
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| T |
45705127 |
agtgatacttaaggacactttagtttacacgc |
45705096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 39591566 - 39591625
Alignment:
| Q |
83 |
aattccaggaagatagccaaaaagggtgagcaccaaacagatccagaactccacctatat |
142 |
Q |
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| T |
39591566 |
aatttcagggagatagcccaaaagggttagcaccaaacagaggcagaactccacctatat |
39591625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 52980642 - 52980583
Alignment:
| Q |
83 |
aattccaggaagatagccaaaaagggtgagcaccaaacagatccagaactccacctatat |
142 |
Q |
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| T |
52980642 |
aattctagggagatagcccaaaagggttagcatcaaatagagccagaactccacctatat |
52980583 |
T |
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