View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12755_low_4 (Length: 423)
Name: NF12755_low_4
Description: NF12755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12755_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 290 - 409
Target Start/End: Complemental strand, 1904436 - 1904317
Alignment:
| Q |
290 |
gctttcaaaagcccttattattagttgatgatagcaatttcgtacatgtcggtccacaaaaaatcagttcggttttttgtaaaggtattttcagctcggt |
389 |
Q |
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| T |
1904436 |
gctttcaaaagcccttattattaattgatgatagcaatttcgtacatgtcggtccacaaaaaatcagtttggttttttgtaaaggtattttcagctcggt |
1904337 |
T |
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| Q |
390 |
tgaaaaccacatgatcagtg |
409 |
Q |
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| T |
1904336 |
tgaaaaccacatgatcagtg |
1904317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 290 - 409
Target Start/End: Complemental strand, 1908669 - 1908550
Alignment:
| Q |
290 |
gctttcaaaagcccttattattagttgatgatagcaatttcgtacatgtcggtccacaaaaaatcagttcggttttttgtaaaggtattttcagctcggt |
389 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1908669 |
gctttcaaaagcccttattattaattgatgatagcaatttcgtacatgtcggtccacaaaaaatcagtttggttttttgtaaaggtattttcagctcggt |
1908570 |
T |
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| Q |
390 |
tgaaaaccacatgatcagtg |
409 |
Q |
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| T |
1908569 |
tgaaaaccacatgatcagtg |
1908550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 1904728 - 1904604
Alignment:
| Q |
18 |
atgtttagctaaattgtttattcaaacacggtctaaaccggataacataccgtataataggtaattagctaactcttaattttccacatatatcttccgc |
117 |
Q |
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| T |
1904728 |
atgtttagctaagttgtttattcaaacacgatctaaacgcgataacatgccgtataataggtaattagctaactcttaattttccacatatatcttccgc |
1904629 |
T |
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| Q |
118 |
aggctccacgtggtggtgtggttgt |
142 |
Q |
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| T |
1904628 |
aggctccacgtggtggtgtggttgt |
1904604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 1908961 - 1908837
Alignment:
| Q |
18 |
atgtttagctaaattgtttattcaaacacggtctaaaccggataacataccgtataataggtaattagctaactcttaattttccacatatatcttccgc |
117 |
Q |
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|||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1908961 |
atgtttagctaagttgtttattcaaacacgatctaaacgcgataacatgccgtataataggtaattagctaactcttaattttccacatatatcttccgc |
1908862 |
T |
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| Q |
118 |
aggctccacgtggtggtgtggttgt |
142 |
Q |
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| T |
1908861 |
aggctccacgtggtggtgtggttgt |
1908837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 1899295 - 1899206
Alignment:
| Q |
291 |
ctttcaaaagcccttattattagtt-gatgatagcaatttcgtacatgtcggtccacaaaaaatcagttcggttttttgtaaaggtattt |
379 |
Q |
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||||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||| | |||||||| ||||||||||| |
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| T |
1899295 |
ctttcaaaagcccttattattggtttgatgatagcaatgttgtacatgtcggtccacaaaaaatcaatacggtttttgttaaaggtattt |
1899206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 1904540 - 1904480
Alignment:
| Q |
206 |
tgtggctaatagttcaccaactgaactgaagttcggttatcatcgttgtgattcagtttgg |
266 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1904540 |
tgtgactaatagttcaccaactgaattgaagttcggttatcatcgttgtgattcagtttgg |
1904480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 1908773 - 1908713
Alignment:
| Q |
206 |
tgtggctaatagttcaccaactgaactgaagttcggttatcatcgttgtgattcagtttgg |
266 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1908773 |
tgtgactaatagttcaccaactgaattgaagttcggttatcatcgttgtgattcagtttgg |
1908713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 1899195 - 1899135
Alignment:
| Q |
342 |
tccacaaaaaatcagttcggtttttt-gtaaaggtattttcagctcggttgaaaaccacat |
401 |
Q |
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| T |
1899195 |
tccaaaaagaatcagttcggtttttttgtaaaggtattttcagctcggttgaaaaccacat |
1899135 |
T |
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