View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12755_low_5 (Length: 404)
Name: NF12755_low_5
Description: NF12755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12755_low_5 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: scaffold0212 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 14036 - 13657
Alignment:
| Q |
13 |
tggacatcaatggtatcggacttatgagtattcagactataacagttccgatgaacagtcactcacttttgacagttatacgattccggaagatgatcta |
112 |
Q |
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| T |
14036 |
tggacatcaatggtatcggacttatgagtattcagactataacagttccgatgaacagtcactcacttttgacagttatacgattccggaagatgatcta |
13937 |
T |
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| Q |
113 |
gaattgggtcaatcacgtttattagaagtggacaatagagtggttgtaccagccaaaactcatctacgtattattgtaacatctgctgatgtacctcata |
212 |
Q |
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| T |
13936 |
gaattgggtcaatcacgtttattagaagtggacaatagagtggttgtaccagccaaaactcatctacgtattattgtaacatctgctgatgtacctcata |
13837 |
T |
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| Q |
213 |
gttgggctgtaccttccttaggtgtcaaatgtgatgctgtacctggtcgtttaaatcagatctctatttcggtacaaagagaaggggtttactatggtca |
312 |
Q |
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| T |
13836 |
gttgggctgtaccttccttaggtgtcaaatgtgatgctgtacctggtcgtttaaatcagatctctatttcggtacaaagagaaggggtttactatggtca |
13737 |
T |
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| Q |
313 |
gtgcagtgagatttgtggaactaatcatgcctttacgcctatcgtcgtagaagctgttcctagtaaagattatggttctc |
392 |
Q |
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| T |
13736 |
gtgcagtgagatttgtggaactaatcatgcctttacgcctatcgtcgtagaagctgttcctagtaaagattatggttctc |
13657 |
T |
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Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 71 - 312
Target Start/End: Original strand, 1677528 - 1677769
Alignment:
| Q |
71 |
tcactcacttttgacagttatacgattccggaagatgatctagaattgggtcaatcacgtttattagaagtggacaatagagtggttgtaccagccaaaa |
170 |
Q |
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| T |
1677528 |
tcactcacttttgaaacttatacgattttggaaaatgatctataattaggtcaatcatgtttattagaattggacaatagagtgattgtaccagccaaaa |
1677627 |
T |
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| Q |
171 |
ctcatctacgtattattgtaacatctgctgatgtacctcatagttgggctgtaccttccttaggtgtcaaatgtgatgctgtacctggtcgtttaaatca |
270 |
Q |
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| T |
1677628 |
ctcatctacgtattattgtaacatttgttgatgtacctcatagttgggttgtacatttcgtaggtgttacatgtgatgttgtacttggtcgttaaaatca |
1677727 |
T |
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| Q |
271 |
gatctctatttcggtacaaagagaaggggtttactatggtca |
312 |
Q |
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| T |
1677728 |
gatctctattttagtacaaagacatggggtttattatggtca |
1677769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 34584489 - 34584443
Alignment:
| Q |
13 |
tggacatcaatggtatcggacttatgagtattcagactataacagtt |
59 |
Q |
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| T |
34584489 |
tggacatcaatggtatcggacttatgagtattcagactataacagtt |
34584443 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 16060149 - 16060112
Alignment:
| Q |
355 |
cgtcgtagaagctgttcctagtaaagattatggttctc |
392 |
Q |
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| T |
16060149 |
cgtcgtagaagctgttcctagtaaagattatggttctc |
16060112 |
T |
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