View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12755_low_6 (Length: 378)
Name: NF12755_low_6
Description: NF12755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12755_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 140 - 363
Target Start/End: Complemental strand, 3873762 - 3873540
Alignment:
| Q |
140 |
gatattcatgaacttatttttctgttgtttgtgaagaatatagttgaacatgttaatcctattgattttcagtgattaatcatcctctataatttgtaca |
239 |
Q |
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| T |
3873762 |
gatattcatgaacttatttttctgttgtttgtgaagaatatagttgaacatgttaatcctattaattttcagtgatcaatcatcctctataatttgtaca |
3873663 |
T |
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| Q |
240 |
cttgtgtaaaagtttatttataacatttgaagactcctttnnnnnnnnnnnnttgaagactagatttttattcatcgtaggatacttattcacttcctct |
339 |
Q |
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| T |
3873662 |
cttgtgtaaaagtttatttataacatttgaagactccttt-aaaaaaaaaaattgaagactagatttttattcatcgtaggatacttattcacttcctct |
3873564 |
T |
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| Q |
340 |
acaaagataccaaaccaacttgct |
363 |
Q |
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|||||||||||||||||||||||| |
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| T |
3873563 |
acaaagataccaaaccaacttgct |
3873540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 3873923 - 3873807
Alignment:
| Q |
18 |
tgactaaccacttgttgtattttatgtgaactgcttgnnnnnnnnagtagtcttttcgatacaccttatactaagaggactgctatataatatagcactg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
3873923 |
tgactaaccacttgttgtattttatgtgaactgcttgttttttttagtagtcttttcgatacaccttatactaaaaggactgctatataa-----cact- |
3873830 |
T |
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| Q |
118 |
ttaatataatccatttttgtttg |
140 |
Q |
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||||||||||||||||||||||| |
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| T |
3873829 |
ttaatataatccatttttgtttg |
3873807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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