View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12755_low_8 (Length: 304)
Name: NF12755_low_8
Description: NF12755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12755_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 289
Target Start/End: Original strand, 27570812 - 27571080
Alignment:
| Q |
21 |
gcacataaatctgatatatattcaaatggtagatgtatattagctgcattgtcaattcgaagaaattacatgtgagatgtcgagagcatgtctaccattg |
120 |
Q |
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| T |
27570812 |
gcacataaatctgatatatattcaaatggtagatgtatattagctgcattgtcaattcgaagaaattacatgtgagatgtcgagagcatgtctaccattg |
27570911 |
T |
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| Q |
121 |
gattagttataacaaaatgcaaaaatataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattggttctcttcttgcctcctaacactgtttc |
220 |
Q |
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| T |
27570912 |
gattagttataacaaaatgcaaaaatataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattggttctcttcttgcctcctaacactgcttc |
27571011 |
T |
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| Q |
221 |
tgatctataattcaggtcctactcatgatttacaaattgcagatatatcagataatagttggctgatgt |
289 |
Q |
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| T |
27571012 |
tgatctataattcaggtcctactcatgatttacaaattgaagatatatcagataatagttggctgatgt |
27571080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 27419797 - 27419680
Alignment:
| Q |
22 |
cacataaatctgatatatattcaaatggtagatgtatattagctgcattgtcaattcgaagaaattacatgtgagatgtcgagagcatgtctaccattgg |
121 |
Q |
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| T |
27419797 |
cacataaatatgatatatattcagttggtagatgtatatttgctgcaatgtcaattagaagaa---acatgtgagatgtctaaagcatgtctacaattgg |
27419701 |
T |
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| Q |
122 |
attagttataacaaaatgcaa |
142 |
Q |
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| T |
27419700 |
attatctatacccaaatgcaa |
27419680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 27425332 - 27425216
Alignment:
| Q |
139 |
gcaaaaatataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattggttctcttcttgcctcctaacactgtttctgatctataattcaggtc |
238 |
Q |
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| T |
27425332 |
gcaaaaatataaattgtggttcctggtggtttgtgatcttgtgttcaatatttgttctcgtttttcctcctaacactgcttctgaactataaatcaggtc |
27425233 |
T |
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| Q |
239 |
ctactcatgatttacaa |
255 |
Q |
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| T |
27425232 |
ctacgcaagctttacaa |
27425216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 27415055 - 27414960
Alignment:
| Q |
172 |
tgatcttgcgtttaatattggttctcttcttgcctcctaacactgtttctgatctataattcaggtcctactcatgatttacaaattgcagatatat |
268 |
Q |
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| T |
27415055 |
tgatcttgtgttcaaaattggttctcttttt-cctcctcacactgtttctgagctataaatcaggtcctactcaagctttacaagttgcacatatat |
27414960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 27422726 - 27422645
Alignment:
| Q |
137 |
atgcaaaaatataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattggttctcttcttgcctcctaacactgtt |
218 |
Q |
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| T |
27422726 |
atgcaaaaatataaaatgtggttcatagtggctcatgttcttgtgttcaatatcggttctcttctctcctcctcacactgtt |
27422645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 27566577 - 27566634
Alignment:
| Q |
145 |
atataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattggttctcttctt |
202 |
Q |
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| T |
27566577 |
atataaaatgtggtttatagtggtttgtgatcttgtgttctatattggttctcttctt |
27566634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 27412061 - 27412020
Alignment:
| Q |
90 |
atgtgagatgtcgagagcatgtctaccattggattagttata |
131 |
Q |
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| T |
27412061 |
atgtgagatgtctaaagcatgtctaccattggattagctata |
27412020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 27425188 - 27425100
Alignment:
| Q |
47 |
tggtagatgtatattagctgcattgtcaattcgaagaaattacatgtgagatgtcgagagcatgtctaccattggattagttataacaaaat |
138 |
Q |
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| T |
27425188 |
tggtatatgtatattagtttccttgtcaattagaagaaag---atgtgagatgtctaaaccatgtctaccattgcattagctataccaaaat |
27425100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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