View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12755_low_9 (Length: 299)
Name: NF12755_low_9
Description: NF12755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12755_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 35481052 - 35481320
Alignment:
| Q |
1 |
aagatgactaaactgaacagatagatgtttcaactttcaatgcaataattggctatattattcacctttaaccatgtaaagataacatacaagctataga |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35481052 |
aagatgactaaactgaacagatagatgtttc-------aatgcaataattggctatattattcacctttaaccatgtaaagataacgtacaagctataga |
35481144 |
T |
|
| Q |
101 |
gaaaacaaaaatgatcaagtccttctattaagtaggcaaagcaaaagaatattgcaactaaacccaaattaataaagagccatattccgcaggacccnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35481145 |
gaaaacaaaaatgatcaagtccttctattaagtaggcaaagcaaaagaatattgcaactaaacccaaattaataaagagccatattccgcaggacccaaa |
35481244 |
T |
|
| Q |
201 |
nnnncaaaggtaaggaagaaagggaaaagagattgaaactcacttgactacaattcctaatccaatcctttaaccc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35481245 |
aaaacaaaggtaaggaagaaagggaaaagagattgaaactcacttgactacaattcctaatccaatcctttaaccc |
35481320 |
T |
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