View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12756_high_4 (Length: 365)

Name: NF12756_high_4
Description: NF12756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12756_high_4
NF12756_high_4
[»] chr7 (10 HSPs)
chr7 (184-349)||(21883014-21883179)
chr7 (54-155)||(41329468-41329569)
chr7 (70-155)||(32653480-32653565)
chr7 (69-171)||(39981318-39981420)
chr7 (82-151)||(41328240-41328309)
chr7 (76-151)||(35296838-35296913)
chr7 (54-155)||(666743-666844)
chr7 (54-137)||(43442761-43442844)
chr7 (80-155)||(669412-669487)
chr7 (118-155)||(32653729-32653766)
[»] chr2 (11 HSPs)
chr2 (54-152)||(28610042-28610140)
chr2 (56-151)||(4919848-4919943)
chr2 (60-174)||(8321247-8321361)
chr2 (69-151)||(28611265-28611347)
chr2 (79-151)||(4921081-4921153)
chr2 (95-149)||(45699523-45699577)
chr2 (76-171)||(19397531-19397626)
chr2 (56-133)||(45699568-45699645)
chr2 (76-153)||(19398820-19398897)
chr2 (60-137)||(25561663-25561740)
chr2 (54-131)||(25559323-25559400)
[»] chr1 (11 HSPs)
chr1 (54-155)||(14479513-14479614)
chr1 (76-158)||(28051627-28051709)
chr1 (76-155)||(28050338-28050417)
chr1 (54-151)||(51446841-51446938)
chr1 (69-151)||(14478287-14478369)
chr1 (69-151)||(51445611-51445693)
chr1 (76-174)||(40634711-40634809)
chr1 (92-171)||(40533640-40533719)
chr1 (54-151)||(12667273-12667370)
chr1 (54-137)||(48528895-48528978)
chr1 (92-137)||(48527569-48527614)
[»] chr3 (5 HSPs)
chr3 (57-155)||(13621959-13622057)
chr3 (54-155)||(49380952-49381053)
chr3 (69-151)||(13620941-13621023)
chr3 (74-151)||(49379722-49379799)
chr3 (76-137)||(14744098-14744159)
[»] scaffold0114 (1 HSPs)
scaffold0114 (54-155)||(38557-38658)
[»] chr4 (16 HSPs)
chr4 (54-155)||(26495139-26495240)
chr4 (54-155)||(36244765-36244866)
chr4 (54-155)||(8363387-8363488)
chr4 (54-155)||(56156952-56157053)
chr4 (79-155)||(36243536-36243612)
chr4 (69-151)||(52137447-52137529)
chr4 (69-151)||(26496322-26496404)
chr4 (78-151)||(56157518-56157591)
chr4 (69-151)||(20620160-20620242)
chr4 (69-151)||(20625517-20625599)
chr4 (69-158)||(52138808-52138896)
chr4 (54-137)||(36846557-36846640)
chr4 (54-131)||(37106248-37106325)
chr4 (54-137)||(35348832-35348915)
chr4 (54-132)||(26631217-26631295)
chr4 (62-138)||(49895074-49895151)
[»] chr8 (9 HSPs)
chr8 (69-151)||(9854892-9854974)
chr8 (54-150)||(9853589-9853685)
chr8 (76-171)||(42793700-42793795)
chr8 (54-155)||(38697173-38697274)
chr8 (54-132)||(43203278-43203356)
chr8 (54-137)||(31844403-31844486)
chr8 (92-155)||(28291401-28291464)
chr8 (92-155)||(28291312-28291375)
chr8 (76-136)||(38697904-38697964)
[»] chr6 (2 HSPs)
chr6 (69-171)||(11722787-11722889)
chr6 (69-142)||(21777497-21777570)
[»] chr5 (8 HSPs)
chr5 (55-155)||(11796586-11796685)
chr5 (69-151)||(23325933-23326015)
chr5 (92-155)||(11797569-11797632)
chr5 (69-151)||(23333980-23334062)
chr5 (76-137)||(41144538-41144599)
chr5 (54-137)||(10736936-10737019)
chr5 (76-138)||(13520802-13520864)
chr5 (61-131)||(41143281-41143351)
[»] scaffold0219 (2 HSPs)
scaffold0219 (60-151)||(6916-7007)
scaffold0219 (92-155)||(8226-8289)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 184 - 349
Target Start/End: Original strand, 21883014 - 21883179
Alignment:
Q  184 atgctttcattataactatttttcacttcataccatgctaagaatctttgttttaacattagggacttaaaatgttcctccttcttttgtatgtatgaat 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21883014 atgctttcattataactatttttcacttcataccatgctaagaatctttgttttaacattagggacttaaaatgttcctccttcttttgtatgtatgaat 21883113  T
Q  284 agaaggaaactaggcaaccatgtgatgaatcttcactaaatttgatgaaatagcatgatctgtgtt 349  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21883114 agaaggaaactaggcaaacatgtgatgaatcttcactaaatttgatgaaatagcatgatctgtgtt 21883179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 41329468 - 41329569
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggg 153  Q
    |||||||||| ||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  41329468 acggaggggatcaatttgactgacggagtaaaatcaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggg 41329567  T
Q  154 ga 155  Q
    ||    
T  41329568 ga 41329569  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 32653565 - 32653480
Alignment:
Q  70 tgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 155  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  32653565 tgaccgacggagcaaaaccaaggggaccgaaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattatttaaggga 32653480  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 39981420 - 39981318
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatcatttgtgcaat 168  Q
    ||||| |||| ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||  ||| ||||    
T  39981420 ttgactgacgaagcaaaaccaaaaggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaacgcacaattatttagaggatcaaatgtccaat 39981321  T
Q  169 taa 171  Q
    |||    
T  39981320 taa 39981318  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 41328309 - 41328240
Alignment:
Q  82 caaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  41328309 caaaaccaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttag 41328240  T

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Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 35296838 - 35296913
Alignment:
Q  76 acggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||||   ||||||||||    
T  35296838 acggagcaaaaccaagggtaccaaaatgtgagttttacaatttataggaccaaaatgtaaactacaaattatttag 35296913  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 666844 - 666743
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagg 152  Q
    ||||||||||||||||||||  ||||||||||| |||| |||||| |||| | |||||||  | ||||| || ||||||| ||||| |||||||||||||    
T  666844 acggaggggaccaaattgactaacggagcaaaa-caagagggaccgaaatattaattttatgagttatgagatcaaaatgaaaactgataattatttagg 666746  T
Q  153 gga 155  Q
    |||    
T  666745 gga 666743  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 43442761 - 43442844
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaac 137  Q
    ||||||||||||||||||||  ||||||||||| |||| |||||||||||||  ||||||| | |||||||||||| ||| ||||    
T  43442761 acggaggggaccaaattgactaacggagcaaaa-caagagggaccaaaatgttgattttacgagttatgggaccaatatgaaaac 43442844  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 669412 - 669487
Alignment:
Q  80 agcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 155  Q
    |||||||| || |||||| ||||||  ||||||| | |||||||||||||||| ||||| ||||||| ||||||||    
T  669412 agcaaaataaaagggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttagggga 669487  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 32653729 - 32653766
Alignment:
Q  118 tatgggaccaaaatgtaaactcataattatttagggga 155  Q
    |||||||||||||||||||  |||||||||||||||||    
T  32653729 tatgggaccaaaatgtaaatacataattatttagggga 32653766  T

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Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 28610140 - 28610042
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagg 152  Q
    ||||| |||| ||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610140 acggatgggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagg 28610042  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 4919943 - 4919848
Alignment:
Q  56 ggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    |||||||| ||| ||||| |||||||||||| |||||||||||||||||| |||||| |||||||||||||||| ||||||  |||||||||||||    
T  4919943 ggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtggattttataatttatgggaccaaattgtaaatgcataattatttag 4919848  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 8321247 - 8321361
Alignment:
Q  60 gggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatcat 159  Q
    |||| ||| ||||||||||||||||||| || ||||| |||||||   ||||| |||||||||||||||||||||||| ||||||||||||| ||||||     
T  8321247 gggatcaatttgaccgacggagcaaaattaaagggactaaaatgttggttttaaaatttatgggaccaaaatgtaaacgcataattatttagaggatcaa 8321346  T
Q  160 ttgtgcaattaaacc 174  Q
     ||| ||||||||||    
T  8321347 atgtccaattaaacc 8321361  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 28611265 - 28611347
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||| |||||||||||| |||  |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  28611265 ttgactgacggagcaaaaccaaaaggaccaaaatatgaattttacaatttatgggaccaaaatgtaaacgcataattatttag 28611347  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 4921081 - 4921153
Alignment:
Q  79 gagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    |||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||    
T  4921081 gagcaaaaccaagaggaccaaaatgtgagttttacaatttatgggactaaaatgtaaacgcataattatttag 4921153  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 45699577 - 45699523
Alignment:
Q  95 accaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattattt 149  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45699577 accaaaatgtgaattttacaatttatgggaccaaaatgtaaacacataattattt 45699523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 19397626 - 19397531
Alignment:
Q  76 acggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatcatttgtgcaattaa 171  Q
    |||||||||||  |  ||||||||||||| | ||||| |||||||||||||||||||||||||  ||||||||||||||| ||||  |||||||||    
T  19397626 acggagcaaaacgagagggaccaaaatgttagttttaaaatttatgggaccaaaatgtaaactggtaattatttaggggaccattgatgcaattaa 19397531  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 45699645 - 45699568
Alignment:
Q  56 ggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgt 133  Q
    |||||||  ||| ||||| |||||||||||| ||| ||||| ||||||||| ||||||||||||||| ||||||||||    
T  45699645 ggagggggtcaatttgactgacggagcaaaaccaaagggactaaaatgtgagttttacaatttatggaaccaaaatgt 45699568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 19398820 - 19398897
Alignment:
Q  76 acggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggg 153  Q
    ||||||||||| |||| |||||||||||||   ||||||||||||||||||||||||||||||   |||||||||||||    
T  19398820 acggagcaaaa-caagagggaccaaaatgtaggttttacaatttatgggaccaaaatgtaaaccggtaattatttaggg 19398897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 25561663 - 25561740
Alignment:
Q  60 gggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaac 137  Q
    ||||||| |||||| || ||||||||| ||| |||||||||  ||  |||||| ||||||||||||||||||| ||||    
T  25561663 gggaccatattgactgatggagcaaaagcaaagggaccaaatcgttgattttagaatttatgggaccaaaatgaaaac 25561740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 25559400 - 25559323
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaat 131  Q
    ||||| |||||||  ||||| |||||||||||| ||| |||||||||  ||  |||||| || |||||||||||||||    
T  25559400 acggaagggaccatcttgactgacggagcaaaagcaaagggaccaaatcgttgattttagaacttatgggaccaaaat 25559323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 14479513 - 14479614
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggg 153  Q
    |||||||||| ||| ||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14479513 acggaggggatcaatttgactgatggagcaaaaccaaggggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttaggg 14479612  T
Q  154 ga 155  Q
    ||    
T  14479613 ga 14479614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 28051627 - 28051709
Alignment:
Q  76 acggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatca 158  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28051627 acggagcaaaatcaaggggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagggaatca 28051709  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 28050417 - 28050338
Alignment:
Q  76 acggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 155  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  28050417 acggagcaaaatcaaggggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttaaggga 28050338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 51446841 - 51446938
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    |||||||||| ||| ||||| |||||||||||| ||||||||||||||||||  |||||||||||||| ||||||||||||||  |||||||||||||    
T  51446841 acggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgggttttacaatttatgtgaccaaaatgtaaatgcataattatttag 51446938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 14478369 - 14478287
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||| |||||||||||| | || |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||    
T  14478369 ttgactgacggagcaaaacccagaggaccaaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttag 14478287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 51445693 - 51445611
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||| ||| || ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  51445693 ttgactgacagatcaaaaccaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttag 51445611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 40634711 - 40634809
Alignment:
Q  76 acggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatcatttgtgcaattaaacc 174  Q
    ||||||||||||||||||||| ||||||||| |||||  |||||| ||| |||||||||||||   |||||||||||||| ||||| || |||||||||    
T  40634711 acggagcaaaatcaaggggacgaaaatgtgagttttatgatttatcggatcaaaatgtaaactgcaaattatttaggggaccatttatgaaattaaacc 40634809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 40533640 - 40533719
Alignment:
Q  92 gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatcatttgtgcaattaa 171  Q
    |||||||||||||   ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||  |||||||||    
T  40533640 gggaccaaaatgttggttttacaatttatggaaccaaaatgtaaactgataattatttaggggaccattgatgcaattaa 40533719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 12667273 - 12667370
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    |||||||||||||| |||||  ||||||||||| |||| |||||| |||||| |||||||| | || | ||||||||||| ||||| ||||||||||||    
T  12667273 acggaggggaccaagttgactaacggagcaaaa-caagagggaccgaaatgttaattttacgaattctaggaccaaaatgaaaactgataattatttag 12667370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 48528895 - 48528978
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaac 137  Q
    ||||| ||||||||||||||  |||||| ||||| |  ||||| |||||||  ||||||| | |||||||||||||||||||||    
T  48528895 acggatgggaccaaattgactaacggagaaaaataagagggactaaaatgttgattttacgagttatgggaccaaaatgtaaac 48528978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 48527614 - 48527569
Alignment:
Q  92 gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaac 137  Q
    ||||||||||||| |||||||| | |||||||||||||||||||||    
T  48527614 gggaccaaaatgttaattttacgagttatgggaccaaaatgtaaac 48527569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 13621959 - 13622057
Alignment:
Q  57 gaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 155  Q
    ||||||| ||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13621959 gaggggatcaatttgactgacgaagcaaaatcaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttagggga 13622057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 49380952 - 49381053
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggg 153  Q
    |||||||||| ||| ||||| |||||||||||| |||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  49380952 acggaggggatcaatttgactgacggagcaaaaccaagggtaccaaaatatgagttttacaatttataggaccaaaatgtaaactcataattatttaggg 49381051  T
Q  154 ga 155  Q
    ||    
T  49381052 ga 49381053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 13621023 - 13620941
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||| |||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||    
T  13621023 ttgactgacggagcaaaaccaagaggaccaaaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattatttag 13620941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 49379799 - 49379722
Alignment:
Q  74 cgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||||||||||| |||| | || ||||||||| |||||||||||||||||||||||| ||||| |||||||||||||    
T  49379799 cgacggagcaaaaccaagagaactaaaatgtgagttttacaatttatgggaccaaaatataaacgcataattatttag 49379722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 14744159 - 14744098
Alignment:
Q  76 acggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaac 137  Q
    ||||||||||| ||| |  |||||||||||| |||||||||||||| |||||||||||||||    
T  14744159 acggagcaaaaccaatgaaaccaaaatgtgagttttacaatttatgagaccaaaatgtaaac 14744098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 38658 - 38557
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggg 153  Q
    |||||||||| ||| ||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  38658 acggaggggatcaatttgactgacggaggaaaaccaaggggaccaaaatgtgagttttacaatttatgggaccaaaatggaaactcataattatttaggg 38559  T
Q  154 ga 155  Q
    ||    
T  38558 ga 38557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 26495240 - 26495139
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggg 153  Q
    |||||||||| ||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  26495240 acggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgagttttacaatttataggagcaaaatgtaaactcataattatttaggg 26495141  T
Q  154 ga 155  Q
    ||    
T  26495140 ga 26495139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 36244765 - 36244866
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggg 153  Q
    |||||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||    
T  36244765 acggaggggatcaatttgactgacggagcaaaatcaaggggacaaaaatgtgagttttacaatttatgggatcaaaatgtaaactcataattattttggg 36244864  T
Q  154 ga 155  Q
    ||    
T  36244865 ga 36244866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 8363387 - 8363488
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggg 153  Q
    |||||||||| ||| |||||  ||||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  8363387 acggaggggatcaatttgactaacggagcaaaaccaaagggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggg 8363486  T
Q  154 ga 155  Q
    ||    
T  8363487 ga 8363488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 56157053 - 56156952
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggg 153  Q
    |||||||||  ||| ||||  |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  56157053 acggagggggtcaatttgattgacggagcaaaaccaaggagaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttaggg 56156954  T
Q  154 ga 155  Q
    ||    
T  56156953 ga 56156952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 36243612 - 36243536
Alignment:
Q  79 gagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 155  Q
    ||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36243612 gagcaaaactaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttagggga 36243536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 52137529 - 52137447
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||||||||||| |||| |||| ||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||    
T  52137529 ttgaccgacggagtaaaaccaagaggaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttag 52137447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 26496322 - 26496404
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||| |||||||||||   ||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||    
T  26496322 ttgactgacggagcaaacctaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacacataattagttag 26496404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 56157518 - 56157591
Alignment:
Q  78 ggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||||  |||||||||||||| |||||||||||||    
T  56157518 ggagcaaaaccaaagggaccaaaatgtgagttttacaatttatgaaaccaaaatgtaaacgcataattatttag 56157591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 20620242 - 20620160
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||| |||||| ||||| |||| ||||  || ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  20620242 ttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcataattatttag 20620160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 20625517 - 20625599
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||| |||||| ||||| |||| ||||  || ||| | |||||||| |||||||||||||||||||||||||||||||||||    
T  20625517 ttgactgacggaccaaaaccaagaggactcaactgtaagttttacaacttatgggaccaaaatgtaaactcataattatttag 20625599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 52138808 - 52138896
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatca 158  Q
    |||||| ||||||||||| |||| ||||||||||| |  | |||||||||||| || |||||| ||||| ||||||||||||| ||||||    
T  52138808 ttgaccaacggagcaaaaccaagaggaccaaaatgggg-tcttacaatttatgtgatcaaaatataaacgcataattatttagaggatca 52138896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 36846557 - 36846640
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaac 137  Q
    ||||| ||||||||||||||  ||||||||||| |||| |||||||||||||  ||||||| | |||||||||||||||| ||||    
T  36846557 acggaagggaccaaattgacgaacggagcaaaa-caagagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 36846640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 37106248 - 37106325
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaat 131  Q
    ||||| ||||||| |||||| |||||||||||| ||| |||||||||  ||  |||||| || |||||||||||||||    
T  37106248 acggaagggaccatattgactgacggagcaaaagcaaagggaccaaatcgttgattttagaacttatgggaccaaaat 37106325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 35348915 - 35348832
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaac 137  Q
    ||||||||||| |||||||| |||| ||||||| |||| ||||| |||| ||  ||||||||| |||||||||||||||| ||||    
T  35348915 acggaggggactaaattgactgacgaagcaaaa-caagagggactaaaacgttgattttacaagttatgggaccaaaatgaaaac 35348832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 26631217 - 26631295
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgggaccaaaatg 132  Q
    ||||||||||||||||||||  ||||||||||| |||| || ||||||||||  ||||||| | ||||| ||||||||||    
T  26631217 acggaggggaccaaattgactaacggagcaaaa-caagaggaaccaaaatgttgattttacgagttatgagaccaaaatg 26631295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 49895151 - 49895074
Alignment:
Q  62 gaccaaattgaccgacggagcaaaa-tcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaact 138  Q
    |||||||||||  |||||||||||| |  ||||||||||||||  |||| || || |||||||||||||||| |||||    
T  49895151 gaccaaattgaatgacggagcaaaagttgaggggaccaaaatgataattatagaacttatgggaccaaaatgaaaact 49895074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 9854892 - 9854974
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  9854892 ttgactgacggagcaaaatcaagaggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttag 9854974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 9853685 - 9853589
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattattta 150  Q
    |||||||||| ||| ||||| |||||||||||| | ||| ||||||||| | | |||||||||||||||||||||||| |||||  |||||||||||    
T  9853685 acggaggggatcaatttgactgacggagcaaaacccaggagaccaaaatattagttttacaatttatgggaccaaaatataaacatataattattta 9853589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 42793795 - 42793700
Alignment:
Q  76 acggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatcatttgtgcaattaa 171  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||||  ||||||||||||||  ||||  |||||||||    
T  42793795 acggagcaaaa-caagagggaccaaaatgttaattttacaatttatgggaccaaaatataaactggtaattatttagggggccattaatgcaattaa 42793700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 38697274 - 38697173
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggg 153  Q
    ||||||||||||   ||||| || |||||||||| || |||||||||||||   ||||| |||||||| |||||||||||||| | ||||||||||| ||    
T  38697274 acggaggggacctttttgactgagggagcaaaataaaagggaccaaaatgttggttttataatttatgagaccaaaatgtaaattgataattatttaagg 38697175  T
Q  154 ga 155  Q
    ||    
T  38697174 ga 38697173  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 43203278 - 43203356
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatg 132  Q
    |||||||||||||||||||| ||||||||||||| |  |||||  ||||||  ||||||| | ||||||||||||||||    
T  43203278 acggaggggaccaaattgactgacggagcaaaataagagggacggaaatgttgattttacgagttatgggaccaaaatg 43203356  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 31844486 - 31844403
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaac 137  Q
    ||||||||||||||||||||  ||||||||||| |||| ||||||||||||| |||||||| | ||| ||||| |||||| ||||    
T  31844486 acggaggggaccaaattgactaacggagcaaaa-caagagggaccaaaatgttaattttacgagttacgggactaaaatgaaaac 31844403  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 28291401 - 28291464
Alignment:
Q  92 gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 155  Q
    |||||| |||||| |||||||| | ||||||||||||| || ||||| ||||||||||||||||    
T  28291401 gggaccgaaatgttaattttacgagttatgggaccaaagtgaaaactgataattatttagggga 28291464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 28291375 - 28291312
Alignment:
Q  92 gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 155  Q
    |||||| ||||||  ||||||| | |||||||||||||||| ||||| ||||||| ||||||||    
T  28291375 gggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttagggga 28291312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 38697964 - 38697904
Alignment:
Q  76 acggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaa 136  Q
    ||||||||||| |||| |||||||||||||  ||||||||| |||||| |||||||||||||    
T  38697964 acggagcaaaa-caagagggaccaaaatgttgattttacaagttatggaaccaaaatgtaaa 38697904  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 11722889 - 11722787
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggggatcatttgtgcaat 168  Q
    ||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||| ||||||  ||| ||||    
T  11722889 ttgactgacggagcaaaaccaagaggaccaaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttagaggatcaaatgtccaat 11722790  T
Q  169 taa 171  Q
    |||    
T  11722789 taa 11722787  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 21777497 - 21777570
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcata 142  Q
    ||||| |||||| ||||| |||| ||||  || ||||| |||||||| ||||||||||||||||||||||||||    
T  21777497 ttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcata 21777570  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 11796685 - 11796586
Alignment:
Q  55 cggaggggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggg 154  Q
    |||| |||| ||| ||||| || ||||||||| |||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11796685 cggatgggatcaatttgactgagggagcaaaaccaaggg-accaaaatatgagttttacaatttatgggaccaaaatgtaaactcataattatttagggg 11796587  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 23326015 - 23325933
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||| |||||| ||||| |||| ||||  || ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  23326015 ttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcataattatttag 23325933  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 11797569 - 11797632
Alignment:
Q  92 gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 155  Q
    |||||||||||||  ||||||| | ||||| |||||||||||||||||||||||||||||||||    
T  11797569 gggaccaaaatgttgattttacgagttatgagaccaaaatgtaaactcataattatttagggga 11797632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 23333980 - 23334062
Alignment:
Q  69 ttgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    ||||| |||||| ||||| |||| ||||  || ||| | |||||||| |||||||||||||||||||||||||||||||||||    
T  23333980 ttgactgacggaccaaaaccaagaggactcaactgttagttttacaacttatgggaccaaaatgtaaactcataattatttag 23334062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 41144538 - 41144599
Alignment:
Q  76 acggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaac 137  Q
    ||||||||||||||| |||||||||| ||  |||||| ||||||||||||||||||| ||||    
T  41144538 acggagcaaaatcaaagggaccaaaacgttgattttagaatttatgggaccaaaatgaaaac 41144599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 10736936 - 10737019
Alignment:
Q  54 acggaggggaccaaattgaccgacggagcaaaatcaag-gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaac 137  Q
    |||||||||||||||||||   ||||||||||| |||| |||||||||||||  ||||||| | |||||||||||||||| ||||    
T  10736936 acggaggggaccaaattgattaacggagcaaaa-caagagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaac 10737019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 13520802 - 13520864
Alignment:
Q  76 acggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaact 138  Q
    ||||||||||| |||| |||||||||||||  ||||| ||||||||| || ||| ||||||||    
T  13520802 acggagcaaaaccaagaggaccaaaatgtgggttttataatttatggaactaaagtgtaaact 13520864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 41143351 - 41143281
Alignment:
Q  61 ggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaat 131  Q
    |||||| |||||| ||| |||||||| ||| |||||||||||||  |||||| || ||||| |||||||||    
T  41143351 ggaccatattgactgacagagcaaaaacaaagggaccaaaatgttgattttagaacttatgagaccaaaat 41143281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 7007 - 6916
Alignment:
Q  60 gggaccaaattgaccgacggagcaaaatcaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttag 151  Q
    |||| ||| |||||||||||||||||| ||| || ||||||||||   |||||||||||||||||||||||||||||| |||||||||||||    
T  7007 gggatcaatttgaccgacggagcaaaaccaaaggaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttag 6916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 8226 - 8289
Alignment:
Q  92 gggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttagggga 155  Q
    |||||||||||||  ||||||| | |||||||||||||||||||||  | ||||| ||||||||    
T  8226 gggaccaaaatgttgattttacgagttatgggaccaaaatgtaaacaaagaattacttagggga 8289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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