View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12756_high_5 (Length: 363)

Name: NF12756_high_5
Description: NF12756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12756_high_5
NF12756_high_5
[»] chr1 (2 HSPs)
chr1 (1-356)||(51119369-51119739)
chr1 (156-246)||(25590744-25590835)
[»] chr3 (2 HSPs)
chr3 (37-306)||(1663250-1663529)
chr3 (180-258)||(51810551-51810630)
[»] chr4 (8 HSPs)
chr4 (37-262)||(28964694-28964917)
chr4 (47-247)||(7043244-7043448)
chr4 (156-261)||(11494107-11494213)
chr4 (156-261)||(9881272-9881378)
chr4 (179-261)||(32347602-32347683)
chr4 (179-247)||(26905394-26905461)
chr4 (155-242)||(25170244-25170330)
chr4 (179-245)||(24520783-24520848)
[»] chr2 (4 HSPs)
chr2 (173-307)||(12635115-12635250)
chr2 (45-107)||(12644630-12644692)
chr2 (156-247)||(40498002-40498092)
chr2 (175-264)||(6962116-6962206)
[»] chr6 (1 HSPs)
chr6 (156-247)||(29010837-29010928)
[»] chr8 (1 HSPs)
chr8 (156-272)||(26794267-26794384)
[»] chr5 (2 HSPs)
chr5 (249-307)||(40905516-40905574)
chr5 (156-195)||(14234156-14234195)
[»] chr7 (1 HSPs)
chr7 (179-308)||(8265811-8265942)
[»] scaffold0019 (1 HSPs)
scaffold0019 (156-247)||(59489-59579)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 51119739 - 51119369
Alignment:
Q  1 tctatgtttcagaattatattcttttctctctgttagatcaaa-----------atgcgcaacataagtgcttttcataataagctgtttcaagcaagat 89  Q
    ||||||||||| |||||||||||||||||||||||||||||||           |||||||||||||||| |||||||||||||||||||||||||||||    
T  51119739 tctatgtttcacaattatattcttttctctctgttagatcaaactatgatcaaaatgcgcaacataagtgtttttcataataagctgtttcaagcaagat 51119640  T
Q  90 gagaaaataacaaacaaacttgtaaaactgagagaatagagaatggagagtttacttgtaattgttaatctcattaagaattaaatgtacacattacaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51119639 gagaaaataacaaacaaacttgtaaaactgagagaatagagaatgaagagtttacttgtaattgttaatctcattaagaattaaatgtacacattacaaa 51119540  T
Q  190 gccttttatatgcaaatataacacttacttgtagcacaagctatctaactaac----taacacgttttgtaacaaaattctaactaatttgttacatggg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||| ||||||||||||    
T  51119539 gccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaactaacacgttttgtaacaaaattctaactaacttgttacatggg 51119440  T
Q  286 agttatggattaaatcttaacactctcttcaacaacacttcttcatgtctttctgttttgtttttcatctc 356  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51119439 agttatgaattaaatcttaacactctcttcaacaacacttcttcatgtctttctgttttgtttttcatctc 51119369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 25590744 - 25590835
Alignment:
Q  156 aatctcattaagaattaaatgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaac 246  Q
    |||||||||||||| | ||||||||| ||||||||||||| |||| |||||  |||||||| |||||| || || |||||| ||||||||||    
T  25590744 aatctcattaagaagtgaatgtacacgttacaaagcctttatataagcaaaactaacacttgcttgtaacataacctatctcactaactaac 25590835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 37 - 306
Target Start/End: Complemental strand, 1663529 - 1663250
Alignment:
Q  37 gatcaaaatgcgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgagagaatagagaatgga 136  Q
    |||||| ||| | ||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| ||||| |||  ||||||||||    
T  1663529 gatcaatatgtgtaacataagtgcttttcagaataagctggtttaagcaagatgagaaaataacaaacaaacttgtaagactgacagagaagagaatgga 1663430  T
Q  137 gag--tttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatc 234  Q
    |||  ||| ||||||||||| |||||||||||||||| ||||||||| |||||||| |||| ||| |||||||||||||||  |||||||||||||||||    
T  1663429 gagagtttgcttgtaattgtgaatctcattaagaattgaatgtacaccttacaaagactttcataggcaaatataacacttgtttgtagcacaagctatc 1663330  T
Q  235 taac--------taactaacacgttttgtaacaaaattctaactaatttgttacatgggagttatggattaaatcttaac 306  Q
    ||||        ||||||| | |||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  1663329 taactaacaaactaactaagaagttttgtaacaaaattctaactaacttgctacatggcagttatggattaaatcttaac 1663250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 51810630 - 51810551
Alignment:
Q  180 acattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaac 258  Q
    |||||||||||||||| |||| |||||  ||||| || ||||||||||||||||||| ||| | ||||  ||||||||||    
T  51810630 acattacaaagcctttatataggcaaaactaacatttgcttgtagcacaagctatctcactgattaactagttttgtaac 51810551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 37 - 262
Target Start/End: Original strand, 28964694 - 28964917
Alignment:
Q  37 gatcaaaatgcgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgagagaatagagaatgga 136  Q
    |||||||||||||||||||||||||||||   ||||||||||| ||| ||||||||||| ||||||||    ||||||||||||||||  ||||||||||    
T  28964694 gatcaaaatgcgcaacataagtgcttttctagataagctgttttaagtaagatgagaaattaacaaac----ttgtaaaactgagagagaagagaatgga 28964789  T
Q  137 gag--tttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatc 234  Q
    |||  ||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||    
T  28964790 gagagtttgcttgtaattgtgaatctcattaagaattgaatgcacacattacaaagccttttataagcaaatacaacacttgcttgtagtacaagctatc 28964889  T
Q  235 taactaactaacacgttttgtaacaaaa 262  Q
    |||||||| ||||  |||||||| ||||    
T  28964890 taactaacaaacaaattttgtaagaaaa 28964917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 47 - 247
Target Start/End: Original strand, 7043244 - 7043448
Alignment:
Q  47 cgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgaga--gaatagagaatggagag--ttt 142  Q
    |||| ||||||||||||||  |||||| ||||| ||||||||||| | |||||||||||||  |||  || | |||  ||  |||||||||||||  |||    
T  7043244 cgcagcataagtgcttttctcaataagttgttttaagcaagatga-agaataacaaacaaaactgttgaagttagaaagagaagagaatggagagagttt 7043342  T
Q  143 acttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatata--acacttacttgtagcacaagctatctaacta 240  Q
     ||||||||  | ||||||||||||   | ||||||||||||||| ||||||||||| | | |||||  |||||| ||||||||||||||||||||||||    
T  7043343 gcttgtaata-tgaatctcattaagttgtgaatgtacacattacatagccttttataggtatatatatcacacttgcttgtagcacaagctatctaacta 7043441  T
Q  241 actaaca 247  Q
    |||||||    
T  7043442 actaaca 7043448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 11494213 - 11494107
Alignment:
Q  156 aatctcattaagaattaaatgtacacattacaaagcct-tttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 254  Q
    |||||||||||||| | ||||||||||||||||||||| | |||| |||||  ||| |||| |||||||||||| |||||| || |||||||  ||||||    
T  11494213 aatctcattaagaagtgaatgtacacattacaaagcctatatataggcaaaactaatacttgcttgtagcacaaactatctcacaaactaactagttttg 11494114  T
Q  255 taacaaa 261  Q
    |||||||    
T  11494113 taacaaa 11494107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 9881378 - 9881272
Alignment:
Q  156 aatctcattaagaattaaatgtacacattacaaagcc-ttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 254  Q
    |||||||||||| | | |||||||||||||||||||| || |||| |||||  |||||||| ||||||| |||||||| ||   ||||||||  ||||||    
T  9881378 aatctcattaagtagtgaatgtacacattacaaagccgttatataggcaaaactaacactttcttgtagaacaagctaactccataactaactagttttg 9881279  T
Q  255 taacaaa 261  Q
    |||||||    
T  9881278 taacaaa 9881272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 32347602 - 32347683
Alignment:
Q  179 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaa 261  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||||||| |||||||||||||||||||||||  ||||| ||||||    
T  32347602 cacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaagctatctaactaactaacaaattttgaaacaaa 32347683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 26905461 - 26905394
Alignment:
Q  179 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 247  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||| ||| |||||||||||||||||||||||    
T  26905461 cacaatacaaagccttttataggcata-atagcacttgcttttagaacaagctatctaactaactaaca 26905394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 25170330 - 25170244
Alignment:
Q  155 taatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaac 242  Q
    |||||||||||||| || ||  | |||| |||||||||||||||| ||| | ||| ||||| ||||||| |||| |||||||||||||    
T  25170330 taatctcattaagacttgaagtttcacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaatctatctaactaac 25170244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 24520783 - 24520848
Alignment:
Q  179 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaa 245  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||||||| ||||||| |||||||||||||    
T  24520783 cacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaagctgtctaactaactaa 24520848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 173 - 307
Target Start/End: Complemental strand, 12635250 - 12635115
Alignment:
Q  173 aatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgt-aacaaaattctaacta 271  Q
    ||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||| ||||| ||||||||||| ||||||| || ||||||||||| |    
T  12635250 aatgtacacattacaaagccttttataggaaaatataacacttgcttgtagcataagttatctcactaactaacaagttttgtaaaaaaaattctaacca 12635151  T
Q  272 atttgttacatgggagttatggattaaatcttaaca 307  Q
    | ||| ||  ||| ||||||| ||||| ||||||||    
T  12635150 acttgctatgtggcagttatgtattaactcttaaca 12635115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 12644692 - 12644630
Alignment:
Q  45 tgcgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaa 107  Q
    |||||||||||||||| ||||| |||||| |||||| |||||||||||||||||  |||||||    
T  12644692 tgcgcaacataagtgcctttcaaaataagttgtttcgagcaagatgagaaaatagaaaacaaa 12644630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 40498092 - 40498002
Alignment:
Q  156 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 247  Q
    |||||||||||||||||||  | |||| |||||||||||||||||||| | ||| ||||| |  |||| |||||| ||||||| ||||||||    
T  40498092 aatctcattaagaattaaagttgcacaatacaaagccttttatatgcaca-atagcacttgccggtagaacaagcaatctaacaaactaaca 40498002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 6962206 - 6962116
Alignment:
Q  175 tgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaaatt 264  Q
    ||||||||||||||||||||| |||| |||||  |||||||| ||||||| ||||| |  ||  |||||||||  ||||||||||||||||    
T  6962206 tgtacacattacaaagcctttatataggcaaaattaacacttgcttgtagaacaagatgacttcctaactaactagttttgtaacaaaatt 6962116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 29010837 - 29010928
Alignment:
Q  156 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 247  Q
    |||||||||||||| | ||||||||||||||||||||||||||| |||||||| |  ||| ||||||||||||||||||| |||||||||||    
T  29010837 aatctcattaagaagtgaatgtacacattacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaaca 29010928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 156 - 272
Target Start/End: Original strand, 26794267 - 26794384
Alignment:
Q  156 aatctcattaagaattaaatgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 254  Q
    |||||||||||||| | ||||||||||||||||||||||| |||| |||||  |||||||| ||||||| |||||||| ||  |||||||||  ||||||    
T  26794267 aatctcattaagaagtgaatgtacacattacaaagcctttatataggcaaaactaacacttgcttgtagaacaagctaactccctaactaactagttttg 26794366  T
Q  255 taacaaaattctaactaa 272  Q
    |||||||||  |||||||    
T  26794367 taacaaaatcttaactaa 26794384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 40905574 - 40905516
Alignment:
Q  249 gttttgtaacaaaattctaactaatttgttacatgggagttatggattaaatcttaaca 307  Q
    |||||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||    
T  40905574 gttttgtaacaaaattctaactaacttgctacatggcagttatagattaaatcttaaca 40905516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 14234195 - 14234156
Alignment:
Q  156 aatctcattaagaattaaatgtacacattacaaagccttt 195  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  14234195 aatctcattaagaagtgaatgtacacattacaaagccttt 14234156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 308
Target Start/End: Complemental strand, 8265942 - 8265811
Alignment:
Q  179 cacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaaattctaactaatttg- 276  Q
    ||||||||||||||||| |||| |||||  |||||||| ||||||| |||||||| ||  |||||||||  ||||| |||||||||   |||||| |||     
T  8265942 cacattacaaagcctttatataggcaaaactaacactttcttgtagaacaagctaacttcctaactaactagttttctaacaaaatctcaactaacttgc 8265843  T
Q  277 ttacatgggagttatggattaaatcttaacac 308  Q
    |||  ||| ||||||| ||||| |||||||||    
T  8265842 ttaggtggcagttatgaattaattcttaacac 8265811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 59489 - 59579
Alignment:
Q  156 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 247  Q
    ||||||||||||| || ||  | |||| |||||||||||||||| ||| | ||  ||||| ||||||| ||||||||| |||||||||||||    
T  59489 aatctcattaagacttgaagttgcacaatacaaagccttttataggcaca-atggcacttgcttgtagaacaagctatttaactaactaaca 59579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University