View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12756_high_6 (Length: 320)
Name: NF12756_high_6
Description: NF12756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12756_high_6 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 8877618 - 8877826
Alignment:
| Q |
30 |
ctagctatacctggtccaatggcagaagtagtagatttcacattcaaagaaggcaggatcgcgcaatatgtaatcatgaatggtatgcttcttgtaactt |
129 |
Q |
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| T |
8877618 |
ctagctatacctggtccaatggcagaagtagtagatttcacattcaaagaaggctggatcgcacaatatgtaatcatgaatggtatgctgcttgtaactt |
8877717 |
T |
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| Q |
130 |
agtaacatgttctaccctcactaagcttaggtctaaccattaccctttattgttagaattcaaaaatgatgactgcttgtttatatctcaatttaaattt |
229 |
Q |
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| T |
8877718 |
agtaacatgttctaccctcactaagcttaggtctaaccattaccctttattgttagaattcaaaaatgatgaatgcttgtttatatctcaatttaaattt |
8877817 |
T |
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| Q |
230 |
ctgaaaatc |
238 |
Q |
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| T |
8877818 |
ctgaaaatc |
8877826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 8883385 - 8883460
Alignment:
| Q |
235 |
aatctggatttcacatcctaattgtattaacatagtgaagaattgttggaacactcaattcattggctgtcctatg |
310 |
Q |
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| T |
8883385 |
aatctggatttcacatcctaattgtattaacatagtgaagaattgttggaacactcaattcattggctgtcctatg |
8883460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 226
Target Start/End: Original strand, 22136171 - 22136356
Alignment:
| Q |
41 |
tggtccaatggcagaagtagtagatttcacattcaaagaaggcaggatcgcgcaatatgtaatcatgaatggtatgcttcttgtaacttagtaacatgtt |
140 |
Q |
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| T |
22136171 |
tggtccaatgggagaagaggtagattccacattcaaaaaaggcttgatagaacaatttgtaaccaggaatggtatgttgcttgtaactttgtaacctatt |
22136270 |
T |
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| Q |
141 |
ctaccctcactaagcttaggtctaaccattaccctttattgttagaattcaaaaatgatgactgcttgtttatatctcaatttaaa |
226 |
Q |
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| T |
22136271 |
caactctcacaaagcttagatcttaccatttccctatccttctagaatttaaaaatggtgactgtctctttgtctctcaatttaaa |
22136356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 12301764 - 12301840
Alignment:
| Q |
37 |
tacctggtccaatggcagaagtagtagatttcacattcaaagaaggcaggatcgcgcaatatgtaatcatgaatggt |
113 |
Q |
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| T |
12301764 |
tacctggtcaaatggaagaaggggtaaatttcacattcaaagaagacttgatagagccatatgtaatcaagaatggt |
12301840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 38319 - 38243
Alignment:
| Q |
37 |
tacctggtccaatggcagaagtagtagatttcacattcaaagaaggcaggatcgcgcaatatgtaatcatgaatggt |
113 |
Q |
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| T |
38319 |
tacctggtcaaatggaagaaggggtaaatttcacattcaaagaagacttgatagagccatatgtaatcaagaatggt |
38243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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