View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12756_low_1 (Length: 541)

Name: NF12756_low_1
Description: NF12756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12756_low_1
NF12756_low_1
[»] chr4 (19 HSPs)
chr4 (15-255)||(37245896-37246136)
chr4 (19-255)||(32577096-32577331)
chr4 (22-251)||(29655717-29655945)
chr4 (30-255)||(21321430-21321655)
chr4 (15-255)||(28537831-28538069)
chr4 (17-255)||(56065532-56065770)
chr4 (22-255)||(49951216-49951449)
chr4 (19-255)||(28426099-28426322)
chr4 (19-255)||(49119448-49119671)
chr4 (53-255)||(18442227-18442429)
chr4 (15-255)||(51735016-51735255)
chr4 (18-248)||(43840353-43840584)
chr4 (17-255)||(41835357-41835595)
chr4 (18-254)||(51259576-51259813)
chr4 (18-255)||(55734912-55735149)
chr4 (17-255)||(2064756-2064994)
chr4 (19-131)||(26422650-26422762)
chr4 (18-134)||(47226377-47226493)
chr4 (15-65)||(24989977-24990027)
[»] chr5 (22 HSPs)
chr5 (19-255)||(22767305-22767541)
chr5 (17-252)||(8387992-8388227)
chr5 (17-251)||(27532952-27533187)
chr5 (17-255)||(4268002-4268240)
chr5 (17-255)||(20204858-20205096)
chr5 (17-255)||(27292337-27292575)
chr5 (18-255)||(12660219-12660456)
chr5 (17-255)||(25730711-25730949)
chr5 (17-255)||(26597503-26597741)
chr5 (15-255)||(41940781-41941021)
chr5 (18-247)||(15988796-15989025)
chr5 (17-254)||(11375559-11375796)
chr5 (15-225)||(34652298-34652507)
chr5 (53-255)||(37448028-37448230)
chr5 (260-408)||(26031480-26031626)
chr5 (160-247)||(30222988-30223075)
chr5 (270-322)||(36855265-36855318)
chr5 (270-329)||(10240701-10240761)
chr5 (17-127)||(32632546-32632656)
chr5 (422-455)||(36855354-36855387)
chr5 (365-405)||(3068081-3068121)
chr5 (215-255)||(16074639-16074679)
[»] chr7 (16 HSPs)
chr7 (19-251)||(9328650-9328881)
chr7 (17-255)||(16731836-16732074)
chr7 (17-255)||(17709970-17710208)
chr7 (17-255)||(16098393-16098631)
chr7 (17-255)||(22289144-22289382)
chr7 (18-255)||(30493657-30493893)
chr7 (15-222)||(29200999-29201208)
chr7 (49-254)||(17877312-17877517)
chr7 (63-255)||(1581518-1581711)
chr7 (53-217)||(30824557-30824720)
chr7 (16-110)||(3275082-3275176)
chr7 (130-231)||(34578437-34578538)
chr7 (422-479)||(20878260-20878316)
chr7 (422-479)||(28031464-28031520)
chr7 (365-406)||(31446949-31446990)
chr7 (422-462)||(38641382-38641422)
[»] chr8 (13 HSPs)
chr8 (17-251)||(7127130-7127364)
chr8 (17-251)||(8451169-8451403)
chr8 (17-251)||(478102-478336)
chr8 (17-255)||(23853835-23854073)
chr8 (17-224)||(185637-185842)
chr8 (19-255)||(13414926-13415162)
chr8 (19-181)||(40588778-40588940)
chr8 (18-247)||(37711990-37712214)
chr8 (52-143)||(9496797-9496887)
chr8 (422-462)||(7888558-7888598)
chr8 (18-71)||(598284-598337)
chr8 (17-106)||(3606785-3606874)
chr8 (270-329)||(20684134-20684194)
[»] chr1 (17 HSPs)
chr1 (17-255)||(25682554-25682792)
chr1 (17-255)||(44527156-44527394)
chr1 (17-250)||(36733604-36733837)
chr1 (18-238)||(48166157-48166377)
chr1 (17-255)||(48949770-48950008)
chr1 (15-255)||(51113218-51113458)
chr1 (17-255)||(4395062-4395299)
chr1 (17-251)||(52109361-52109594)
chr1 (17-255)||(5609242-5609480)
chr1 (17-255)||(16816846-16817083)
chr1 (17-144)||(44602766-44602893)
chr1 (124-254)||(24538414-24538544)
chr1 (255-405)||(22572109-22572257)
chr1 (18-68)||(2885313-2885363)
chr1 (422-480)||(8904841-8904899)
chr1 (277-329)||(8904759-8904812)
chr1 (422-487)||(14615076-14615140)
[»] chr2 (15 HSPs)
chr2 (17-255)||(88462-88700)
chr2 (17-223)||(44017364-44017570)
chr2 (17-236)||(34695950-34696167)
chr2 (17-236)||(34718362-34718579)
chr2 (22-255)||(12130689-12130922)
chr2 (55-255)||(18345571-18345770)
chr2 (74-177)||(9709910-9710013)
chr2 (16-214)||(26198637-26198824)
chr2 (15-144)||(1418025-1418154)
chr2 (17-92)||(22845602-22845677)
chr2 (19-77)||(9710036-9710094)
chr2 (18-89)||(13109916-13109987)
chr2 (20-112)||(14827126-14827218)
chr2 (348-407)||(6298926-6298985)
chr2 (276-322)||(11673478-11673525)
[»] chr6 (8 HSPs)
chr6 (16-255)||(15606039-15606278)
chr6 (17-238)||(28107059-28107280)
chr6 (15-165)||(19690923-19691073)
chr6 (17-255)||(14680062-14680303)
chr6 (20-181)||(30802040-30802201)
chr6 (18-226)||(15053222-15053430)
chr6 (17-213)||(29368102-29368296)
chr6 (17-178)||(11731715-11731873)
[»] chr3 (15 HSPs)
chr3 (17-224)||(42340323-42340530)
chr3 (17-255)||(53496935-53497173)
chr3 (18-255)||(55199414-55199651)
chr3 (67-245)||(647307-647485)
chr3 (17-113)||(647209-647305)
chr3 (17-255)||(46007204-46007440)
chr3 (106-227)||(27941129-27941250)
chr3 (49-144)||(11020258-11020353)
chr3 (22-252)||(48227319-48227550)
chr3 (83-254)||(2615397-2615568)
chr3 (15-95)||(24176833-24176913)
chr3 (421-476)||(33633710-33633765)
chr3 (17-67)||(27608949-27608999)
chr3 (17-67)||(34497418-34497468)
chr3 (282-329)||(444652-444700)
[»] scaffold0446 (1 HSPs)
scaffold0446 (17-255)||(89-327)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 37245896 - 37246136
Alignment:
Q  15 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 114  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||     
T  37245896 cagagacgaaagagcttgcactaaagtagcagagtcagactcgaagacaacccggtcccatctgttcacataagcaaagtgaatagcatcgagtaaggct 37245995  T
Q  115 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatg 214  Q
    | ||||||||||||||||||||||||||||  |||||||||||| ||||| ||| ||||||||| ||| |||||||||||||| ||||||||| | ||||    
T  37245996 actgcctccccctccaaaactgtcatatttgcccgtttccatttcgtttgtgcccgaataaatttccctcgggagtctctaacacaacatgcagaggatg 37246095  T
Q  215 taagatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||||| | ||||||||| |||||||| ||||||||||||||    
T  37246096 taagacgattacggtcatggaacgcggcatccacattgcac 37246136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 32577096 - 32577331
Alignment:
Q  19 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 118  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||| | ||||||| |||||||||| | |     
T  32577096 gacgattgagcttgcactagagtagcagagtcagactcgaagacaacccagtcccatatgtttacatcagcaaagtaaatagcagcgagtaaggctagta 32577195  T
Q  119 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 218  Q
    |||||||||||||||| |||||||||  ||||| |||||| ||||||||| |||||||||| |||||||| |||||||| ||||| ||||||||||||||    
T  32577196 cctccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccgaataaattg-ccccgggaatctctaacacaacacgcaaaagatgtaag 32577294  T
Q  219 atggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||||||| ||||| |||||||  ||||||||||||||    
T  32577295 atggttaaggtcatggaacgcagcatccacattgcac 32577331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 29655717 - 29655945
Alignment:
Q  22 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 121  Q
    |||||||||||||||| ||||||  | ||||||||||||||||| |||| ||||||||||||||||||||| |||||  ||||||||||||| | |||||    
T  29655717 gatagagcttgcactagagtagcgtagtcagactcgaagacaacacggttccatctgttcacatcagcaaagtgaatgacatcgagtaaggctactgcct 29655816  T
Q  122 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 221  Q
    | ||||||||||| |||||||||  ||| | |||||||||||||||| ||||||||||||| |||||| ||||||| |||||  |||||||||||||| |    
T  29655817 ctccctccaaaacagtcatatttgcccgctgccattttgtttgagcccgaataaattgcccacgggagcctctaacacaaca-acaaaagatgtaagagg 29655915  T
Q  222 gttacggtcaaggaacgcgacatccacatt 251  Q
    |||||| ||| |||||||| ||||||||||    
T  29655916 gttacgatcatggaacgcggcatccacatt 29655945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 21321655 - 21321430
Alignment:
Q  30 ttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctcc 129  Q
    |||||||| |||||  || || |||||||||||||||||||||||||||||  |||||| ||| ||||  || ||||||||||| |||| ||||||||||    
T  21321655 ttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagaaaagtgaagggcctcgagtaaggctattgtctccccctcc 21321556  T
Q  130 aaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggt 229  Q
    |||||||||||||||  ||||| |||||| ||||||||| ||||||||| ||| || ||||||||||  ||||||||||||| ||||| |||||||||||    
T  21321555 aaaactgtcatatttgcccgttgccatttcgtttgagcccgaataaatttcccgcgagagtctctaatacaacatgcaaaagttgtaatatggttacggt 21321456  T
Q  230 caaggaacgcgacatccacattgcac 255  Q
    || ||||||| |||||||||||||||    
T  21321455 catggaacgcaacatccacattgcac 21321430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 28537831 - 28538069
Alignment:
Q  15 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 114  Q
    |||||||||||||||||||||||||||||  || || |||| ||| ||||||||||||||||||||| ||||| |||| ||||  || |||||||||||     
T  28537831 cagagacgatagagcttgcactaaagtagatgagtcggacttgaacacaacccggtcccatctgttcgcatcaacaaagtgaagggcctcgagtaaggct 28537930  T
Q  115 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatg 214  Q
    | ||||||||||||  ||||| ||||||||| ||| | |||||| ||||||||| |||||||||||||  ||||||||||||| ||||| |||||| |||    
T  28537931 actgcctccccctc--aaactatcatattttcccgctgccatttcgtttgagcccgaataaattgcccgtgggagtctctaacacaacacgcaaaatatg 28538028  T
Q  215 taagatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||| ||||||||| ||| |||||||  ||||||||||||||    
T  28538029 taatatggttacgatcatggaacgcagcatccacattgcac 28538069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 56065770 - 56065532
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||| ||||| |||||||||| |||||| || || |||||||||||||||||||||||| | ||| || ||||||| ||||| |||||||||||||| |     
T  56065770 gagatgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggcatcgagtaaggcaac 56065671  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||||||||||||||||   ||||  ||||| ||||||||| |||| |||||||| |||||||||||||  ||||| || |||||||||    
T  56065670 tgcctccccctccaaaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaaaacaacacgcgaaagatgta 56065571  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||| | ||||||| | ||| |||||||||||||||||    
T  56065570 atatgttgacggtcatgaaacacgacatccacattgcac 56065532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 49951449 - 49951216
Alignment:
Q  22 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 121  Q
    |||| ||||||||||| |||||  || || |||||||||||||| |||| |||||||||| |||||||||| ||||  || ||||||||||| | |||||    
T  49951449 gataaagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcct 49951350  T
Q  122 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 221  Q
    |||||||||| ||||||||||||  ||| | |||||| ||||||||| |||||||||| || || || |||||||| || |||||||||||||||| |||    
T  49951349 ccccctccaatactgtcatatttgcccgctgccatttcgtttgagcccgaataaattggccgcgagaatctctaacacagcatgcaaaagatgtaatatg 49951250  T
Q  222 gttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||| |||||| |||| ||| ||||||||||||||    
T  49951249 gttgcggtcatggaatgcggcatccacattgcac 49951216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 28426322 - 28426099
Alignment:
Q  19 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 118  Q
    |||||||||||| |||||| |||| |||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||    
T  28426322 gacgatagagctggcactagagtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 28426223  T
Q  119 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 218  Q
    |||||||||||||||| |||||||||  | ||| |||||| ||||||||| |||             ||| |||||||| |||||  |||||||||||||    
T  28426222 cctccccctccaaaacagtcatatttgcctgttgccatttcgtttgagcccgaa-------------ggaatctctaacacaacacacaaaagatgtaag 28426136  T
Q  219 atggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  28426135 atggttacggtcatggaacgcggcatccacattgcac 28426099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 49119448 - 49119671
Alignment:
Q  19 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 118  Q
    |||||||||||| |||||| |||| |||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||    
T  49119448 gacgatagagctggcactagagtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 49119547  T
Q  119 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 218  Q
    |||||||||||||||| |||||||||  | ||| |||||| ||||||||| |||             ||| |||||||| |||||  |||||||||||||    
T  49119548 cctccccctccaaaacagtcatatttgcctgttgccatttcgtttgagcccgaa-------------ggaatctctaacacaacacacaaaagatgtaag 49119634  T
Q  219 atggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  49119635 atggttacggtcatggaacgcggcatccacattgcac 49119671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 53 - 255
Target Start/End: Original strand, 18442227 - 18442429
Alignment:
Q  53 actcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgttt 152  Q
    ||||||| | |||||||| |||||||||| || ||||||| || |  || ||||||||||| | ||||||||||||||| ||||||||||||| ||| ||    
T  18442227 actcgaaaataacccggttccatctgttcgcaacagcaaagtgtagggcctcgagtaaggctactgcctccccctccaatactgtcatattttcccgctt 18442326  T
Q  153 ccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattg 252  Q
    |||||| ||||||||| |||||||||||||  ||||||||||||| ||||| ||||||| ||||| |||||| |||||| |||||||||||||| |||||    
T  18442327 ccatttcgtttgagcccgaataaattgcccatgggagtctctaacacaacacgcaaaagttgtaatatggttgcggtcatggaacgcgacatccgcattg 18442426  T
Q  253 cac 255  Q
    |||    
T  18442427 cac 18442429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 51735016 - 51735255
Alignment:
Q  15 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 114  Q
    ||||||||||||||||||||||| |||||  ||  | |||||||||||||| || ||| |||| |||||||||||||| ||||| ||||||||||||||     
T  51735016 cagagacgatagagcttgcactagagtagaggagcctgactcgaagacaactcg-tcctatctattcacatcagcaaagtgaatggcatcgagtaaggct 51735114  T
Q  115 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatg 214  Q
    | ||||||||||||||||||||||||||||   || |  ||||| |||| |||| |||||||||| |  ||| |||||||||| |||||  |||||||||    
T  51735115 actgcctccccctccaaaactgtcatatttgcacgctgtcatttcgtttaagcccgaataaattgtcaacggaagtctctaacacaacacacaaaagatg 51735214  T
Q  215 taagatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||||||||||||  ||| |||||||| ||||||| ||||||    
T  51735215 taagatggttacaatcatggaacgcggcatccacgttgcac 51735255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 43840353 - 43840584
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaa-ggcgat 116  Q
    ||||||||||||||||| || |||||| || ||  |||||||||||| |||||| ||| |||||||||||||||| ||||| ||||||||||| ||   |    
T  43840353 agacgatagagcttgcattagagtagctgagtcgaactcgaagacaaaccggtctcatttgttcacatcagcaaagtgaatggcatcgagtaaaggttgt 43840452  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    || |||||||||||| |||||||||||| |||| | |||||| |||||| || |||||||||| || |||||||||||||| ||| | ||||||||||||    
T  43840453 tgtctccccctccaacactgtcatatttgtccgctgccatttcgtttgaccccgaataaattgtccacgggagtctctaacacaaaacgcaaaagatgta 43840552  T
Q  217 agatggttacggtcaaggaacgcgacatccac 248  Q
    ||||||||| | |||  ||||||| |||||||    
T  43840553 agatggttatgctcatagaacgcggcatccac 43840584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 41835357 - 41835595
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||||||||| | |||||||| |||||  |||||  ||||||||||||||||||||||||||||  |||| ||||| ||||  |  ||||||||||| |     
T  41835357 gagacgatagcgtttgcactagagtagatgaatcgaactcgaagacaacccggtcccatctgtttgcatccgcaaaatgaagggtctcgagtaaggctac 41835456  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||| ||||||||||||||||||||||||  | | |  ||||||||||||||| |||||||||| |  || ||||||||||| ||||| ||||||| ||||    
T  41835457 tgcatccccctccaaaactgtcatatttgccagctgtcattttgtttgagcccgaataaattgtctgcgagagtctctaacacaacacgcaaaagttgta 41835556  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||||||||| |||||||||| | ||||||||||||||    
T  41835557 atatggttacgttcaaggaacgtggcatccacattgcac 41835595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 51259576 - 51259813
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 117  Q
    ||||||||| |||||||||| |||||| || || ||||||||||||||| ||||| | ||| || || ||||||| |||||  ||||||||||||| | |    
T  51259576 agacgatagcgcttgcactagagtagctgagtcggactcgaagacaacctggtccgaactgatcccaacagcaaagtgaatgacatcgagtaaggcaact 51259675  T
Q  118 gcctcccc-ctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    |||||||| |||||||||||||||||||   |||| |||||| ||||||||| |||| |||||||| || ||||||||||| |||||| | |||||||||    
T  51259676 gcctcccccctccaaaactgtcatatttgctcgttgccatttcgtttgagcccgaatgaattgcccacgagagtctctaacacaacatacgaaagatgta 51259775  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgca 254  Q
    | ||| | ||||||| | |||||| |||||||||||||    
T  51259776 atatgttgacggtcatgaaacgcggcatccacattgca 51259813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 55735149 - 55734912
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 117  Q
    |||||||||||||||||||| |||||  ||||| |||||||| | |||||||| |||| ||||| || || |||| ||||  || ||||||||||| | |    
T  55735149 agacgatagagcttgcactagagtagatgaatcggactcgaaaataacccggttccatgtgttcgcaacaacaaagtgaagggcctcgagtaaggctact 55735050  T
Q  118 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 217  Q
    |||||||||||||| ||||||||||||   || |||||||| ||||||||| ||| ||||||| |  ||||||||||||| ||||| |||||||||||||    
T  55735049 gcctccccctccaatactgtcatatttgctcgcttccatttcgtttgagcccgaacaaattgctcatgggagtctctaacacaacacgcaaaagatgtaa 55734950  T
Q  218 gatggttacggtcaaggaacgcgacatccacattgcac 255  Q
     ||||||  | ||| ||| |||||||||||||||||||    
T  55734949 tatggttgagatcatggagcgcgacatccacattgcac 55734912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 2064994 - 2064756
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||||||||||  ||| |||||  || || ||||| |||||||||||   |||||||||| |||||||||| ||||  || ||||||||||| |     
T  2064994 gagacgatagagcttgggctagagtagatgagtccgactcaaagacaacccgactccatctgttctcatcagcaaagtgaagggcgtcgagtaaggctac 2064895  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||| ||| ||||||||||||  ||| |  ||||||||||||||| |||||||||  || |||||||||||||| ||||| ||| | ||||||    
T  2064894 tgcctcccccttcaatactgtcatatttgcccgctgtcattttgtttgagcccgaataaattatccgcgggagtctctaacacaacacgcagaggatgta 2064795  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||||||||||||| |||||| | | ||||||||||||    
T  2064794 atatggttacggtcatggaacgtggcgtccacattgcac 2064756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 26422650 - 26422762
Alignment:
Q  19 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 118  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||| | ||    
T  26422650 gacgatagagcttgcactagagtatcagagtcagactcgaagacaacccgatcccatctgtttacatcagcaaagtaaatagcatcgagtaaggctactg 26422749  T
Q  119 cctccccctccaa 131  Q
    |||||| ||||||    
T  26422750 cctccctctccaa 26422762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 47226377 - 47226493
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 117  Q
    |||||||||||||||| |||||||||  || || |||||||| ||||| || || ||||||||| |||||||||| |||| ||| ||||||||| | |||    
T  47226377 agacgatagagcttgctctaaagtagatgagtcggactcgaacacaactcgatctcatctgttcgcatcagcaaagtgaaaagcctcgagtaagactatt 47226476  T
Q  118 gcctccccctccaaaac 134  Q
     ||||||||||||||||    
T  47226477 acctccccctccaaaac 47226493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 24989977 - 24990027
Alignment:
Q  15 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaac 65  Q
    |||||||| |||||||||||||| |||||| || |||||||| ||||||||    
T  24989977 cagagacggtagagcttgcactagagtagctgagtcagactcaaagacaac 24990027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 22767305 - 22767541
Alignment:
Q  19 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 118  Q
    ||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||    
T  22767305 gacgatagagcttgcactagagtatcagagtcaaactcgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 22767404  T
Q  119 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 218  Q
    |||||||||||||||| |||||||||  ||||| |||||| ||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  22767405 cctccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccgaataaattgcccccgggaatctctaacacaacacgcaaaagatgtaag 22767504  T
Q  219 atggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||| |||| |||| |||||||| ||||||||||||||    
T  22767505 atgattactgtcatggaacgcggcatccacattgcac 22767541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 8388227 - 8387992
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||||||||| |||||||||| |||||| || || |||||||||||||||||||||||||||||| || | ||||| ||||| |||||||||||||| |     
T  8388227 gagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatctgttcccaaccgcaaagtgaatggcatcgagtaaggcaac 8388128  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    |||||||||||||||||||||||||||| | |||| |||||| |||||||||||||| |||||||| || ||||||||||| ||||| || |||||||||    
T  8388127 tgcctccccctccaaaactgtcatatttgttcgttgccatttcgtttgagcctgaatgaattgcccacgagagtctctaacacaacacgcgaaagatgta 8388028  T
Q  217 agatggttacggtcaaggaacgcgacatccacattg 252  Q
    | ||  | ||||||| | |||||| |||||||||||    
T  8388027 atattttaacggtcatgaaacgcggcatccacattg 8387992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 27532952 - 27533187
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||| ||  |||||||||| |||| | || |||||||| ||||||||||||||||| |||||||||||||| |||||  |||||| ||| || ||    
T  27532952 gagacgataaagtctgcactaaagaagcaaagtcggactcgaaaacaacccggtcccatctattcacatcagcaaagtgaatgacatcgaataaagctat 27533051  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgc-aaaagatgt 215  Q
    ||||||||||||||||||||| ||||||| | | | |||||| ||||||||| ||||||||||||| |||||||||||||| ||||| || |||||||||    
T  27533052 tgcctccccctccaaaactgttatattttcctgctaccatttcgtttgagcccgaataaattgcccacgggagtctctaacacaacacgcaaaaagatgt 27533151  T
Q  216 aagatggttacggtcaaggaacgcgacatccacatt 251  Q
    ||  |||||||| ||| |||||||||||||||||||    
T  27533152 aaactggttacgatcatggaacgcgacatccacatt 27533187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 4268240 - 4268002
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||| |||||||||||||||| |||||  || || |||||||||| |||||||||||| |||||  |||||||||| ||||  || || |||||||| |     
T  4268240 gagatgatagagcttgcactagagtagatgagtcggactcgaagaaaacccggtcccacctgttagcatcagcaaagtgaagggcctctagtaaggctac 4268141  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||||||||||||||||  ||| | |||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||    
T  4268140 tgcctccccctccaaaactgtcatatttgcccgctgccattttgtttgagcctgaataaattgcccacgagagtctctaacacaacacgcaaaagatgta 4268041  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||||||||  ||||| |||||| | ||||| ||||||    
T  4268040 atatggttacaatcaagaaacgcggcgtccacgttgcac 4268002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 20205096 - 20204858
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||| |||||||||||||||| |||||  || || |||||||||||||| |||| |||||||||| || || |||| ||||| || ||||||||||| |     
T  20205096 gagaggatagagcttgcactagagtagatgagtcggactcgaagacaactcggttccatctgttcgcaacaacaaagtgaatggcctcgagtaaggctac 20204997  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||| ||||||||||||  ||||| |||||| ||||||||||| ||||||| ||| |||||||||||| | ||| ||| ||||||||||    
T  20204996 tgcctccccctccaatactgtcatatttgcccgttgccatttcgtttgagcctggataaatttcccgcgggagtctctagcacaaaatgtaaaagatgta 20204897  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||||||| ||||| |||||||| ||||||||||||||    
T  20204896 atatggttatggtcatggaacgcggcatccacattgcac 20204858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 27292575 - 27292337
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||||||||||| |||||||| || ||  || ||  ||||||||||||||||||||||||||||  |||||||||| ||||  ||||| |||||||| ||    
T  27292575 gagacgatagagtttgcactagagcagatgagtcgaactcgaagacaacccggtcccatctgttatcatcagcaaagtgaagggcatctagtaaggctat 27292476  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||| ||||||  | |||||| |||| | |||||||||||||||| ||||||||||||| || ||||||||||| |||||||||||| |||||    
T  27292475 tgcctcccccttcaaaacaataatatttgtccgctgccattttgtttgagcccgaataaattgcccacgagagtctctaacacaacatgcaaaatatgta 27292376  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||||||||  ||| |||||| ||||||||||||||||    
T  27292375 atatggttactatcatggaacgtgacatccacattgcac 27292337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 12660456 - 12660219
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 117  Q
    |||||||||||||||||||| |||||| || |||||||||| || ||| ||||| ||| ||||||||| |||||| |||||  ||||||||||| | | |    
T  12660456 agacgatagagcttgcactagagtagctgagtcagactcgacgataacacggtctcatttgttcacattagcaaagtgaatgacatcgagtaagactact 12660357  T
Q  118 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 217  Q
    ||||||| ||| || ||||||||||||  ||| | |||||| ||||||||| |||||||||| ||  |  |||||||||| ||||| |||||||||||||    
T  12660356 gcctcccgctctaacactgtcatatttgcccgctgccatttcgtttgagcccgaataaattgtccatgaaagtctctaacacaacacgcaaaagatgtaa 12660257  T
Q  218 gatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    |||||||||| ||| |||||||| ||||||||||||||    
T  12660256 gatggttacgttcatggaacgcggcatccacattgcac 12660219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 25730949 - 25730711
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||||||||||||||| |||||  || || |||||||||||||| | ||||||||||||| |||||||||| ||||  || ||||||||||| |     
T  25730949 gagacgatagagcttgcactagagtagatgagtcggactcgaagacaactcagtcccatctgttcgcatcagcaaagtgaagggcctcgagtaaggctac 25730850  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||||||||||||||||  ||| | |||||| ||||||||  ||||||||| ||| || ||| ||||||| ||||| |  |||  ||||    
T  25730849 tgcctccccctccaaaactgtcatatttgcccgctgccatttcgtttgagctcgaataaatttcccgcgtgagactctaacacaacacgtgaaaattgta 25730750  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||||||||||||| ||||||||  |||||||||||||    
T  25730749 atatggttacggtcatggaacgcggaatccacattgcac 25730711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 26597503 - 26597741
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||||||||| |||||||||| |||||| || || |||||||||||||||||||| ||||| ||| || | ||||| ||||| |||||||||||||| |     
T  26597503 gagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtctcatctattcccaactgcaaagtgaatggcatcgagtaaggcaac 26597602  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||||| ||||||||||   |||| |||||| ||||||||| |||| ||||| || |||||||||||||| ||||| || |||||||||    
T  26597603 tgcctccccctccaaaattgtcatatttgctcgttgccatttcgtttgagcccgaatgaattgtccacgggagtctctaacacaacacgcgaaagatgta 26597702  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||| | | | ||| | |||||| ||||||||||||||    
T  26597703 atatgttgatgatcatgaaacgcggcatccacattgcac 26597741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 41940781 - 41941021
Alignment:
Q  15 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 114  Q
    |||||||||||||| |||||||| |||||  || || |||||||||||||||||||||  | ||||||||| |||||| |||||  ||| |||||||||     
T  41940781 cagagacgatagagtttgcactagagtagttgagtcggactcgaagacaacccggtccagt-tgttcacatgagcaaagtgaatgacattgagtaaggct 41940879  T
Q  115 attgcctccccctccaaaactgtcatatttttccgt-ttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagat 213  Q
    |||| ||||||||||||||||||||||||||||  | |  ||||| ||||||||  ||||||||| ||| ||||||||| |||| | |||  ||||||||    
T  41940880 attgtctccccctccaaaactgtcatatttttctatatgtcatttcgtttgagctcgaataaatttcccacgggagtctttaacactacacacaaaagat 41940979  T
Q  214 gtaagatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||||||| |||||||||| |||||||| ||||||||||||||    
T  41940980 gtaagatagttacggtcatggaacgcggcatccacattgcac 41941021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 15988796 - 15989025
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 117  Q
    ||||||||||| |||||||| |||||| ||  | |||| ||||||||||||||||||| ||||| |||||||||| | ||  || ||||||||||  | |    
T  15988796 agacgatagagattgcactagagtagctgagacggacttgaagacaacccggtcccatatgttcgcatcagcaaagtaaagggcctcgagtaaggttact 15988895  T
Q  118 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 217  Q
    ||||||||||||||||||||||||||| |||| | |||||| ||||||||| ||||||||||| | ||  ||||||| ||  |||| ||||||| |||||    
T  15988896 gcctccccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaattgctcgcgaaagtctctgacataacacgcaaaagttgtaa 15988995  T
Q  218 gatggttacggtcaaggaacgcgacatcca 247  Q
     |||||| |||||| |||||||||||||||    
T  15988996 tatggttgcggtcatggaacgcgacatcca 15989025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 11375559 - 11375796
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||||||||||||||| | |||  ||||||||||| |||||||||||||||||| | ||  |||| ||||| ||||  || ||||||||||| |     
T  11375559 gagacgatagagcttgcactagaatagatgaatcagactcaaagacaacccggtcccatatatttgcatccgcaaaatgaagggcctcgagtaaggctac 11375658  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    || |||||||||||||||||||||||||   || | |||||| ||||||| | ||||||||  ||  || ||||||||||| ||||||||||||| ||||    
T  11375659 tgtctccccctccaaaactgtcatatttactcgctgccatttcgtttgagtccgaataaatcacctgcgagagtctctaacacaacatgcaaaagttgta 11375758  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgca 254  Q
    | ||||||||| ||| |||||||  |||||||||||||    
T  11375759 atatggttacgttcatggaacgcagcatccacattgca 11375796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 34652298 - 34652507
Alignment:
Q  15 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 114  Q
    |||||||| |||||||||||||| |||||  || || | ||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||      
T  34652298 cagagacggtagagcttgcactagagtagtcgagtcgggctcgaagacaacccgatcccatctgttcacatcggcaaagtgaatggcatcgagtaaggtt 34652397  T
Q  115 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatg 214  Q
    |||  |||||| | ||| ||||||||||||   || | || ||||||||||| | | ||||||||||| |||||||||||||| |||||  |||||||||    
T  34652398 attatctccccttacaacactgtcatatttgctcgctgcc-ttttgtttgagaccggataaattgcccacgggagtctctaacacaacacacaaaagatg 34652496  T
Q  215 taagatggtta 225  Q
    |||||||||||    
T  34652497 taagatggtta 34652507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 53 - 255
Target Start/End: Complemental strand, 37448230 - 37448028
Alignment:
Q  53 actcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgttt 152  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||  ||||||||||||| |  |||||||| | ||| |||||||| |||   || |     
T  37448230 actcgaagacaacccggttccatctgttcacatcagcaaagtgaatgacatcgagtaaggctaccgcctcccctttcaacactgtcatgtttgcacgctg 37448131  T
Q  153 ccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattg 252  Q
    |||||||||||||| | ||||| |||| || || ||||||||||| ||||||  ||| ||||||||||||||| ||||| ||||| |||||||||||| |    
T  37448130 ccattttgtttgagtccgaatacattgtccacgagagtctctaacacaacatataaacgatgtaagatggttatggtcatggaacacgacatccacatcg 37448031  T
Q  253 cac 255  Q
    |||    
T  37448030 cac 37448028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 260 - 408
Target Start/End: Original strand, 26031480 - 26031626
Alignment:
Q  260 ttctgtaggtaa--gtccgaaagacaacaattttgctgtcaatttgcattatccataggtaaatgcctatttttctatggttgaaactcttatttaaacg 357  Q
    ||||||||||||  ||| ||||||||||| |||||  ||||||||||||||||||||| ||||||||||||||||| ||| | ||| |  |||||||||     
T  26031480 ttctgtaggtaaaagtctgaaagacaacagttttgtcgtcaatttgcattatccatagttaaatgcctatttttctgtgggtaaaattactatttaaacc 26031579  T
Q  358 attacttatatatttaactacaactcagttgtctgtaactataagtggtgt 408  Q
    |    |||||||||||||||||| |||||||||||||||||||||||||||    
T  26031580 a----ttatatatttaactacaattcagttgtctgtaactataagtggtgt 26031626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 30222988 - 30223075
Alignment:
Q  160 gtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatcca 247  Q
    ||||||||| |||||||||||||  || |||||||||| ||||| ||||||||||||| |||||||| |||| |||||||||| ||||    
T  30222988 gtttgagcccgaataaattgcccatggaagtctctaacacaacacgcaaaagatgtaatatggttacagtcatggaacgcgacgtcca 30223075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 36855265 - 36855318
Alignment:
Q  270 aagtccgaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatg 322  Q
    ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  36855265 aagtctgaaagacagcaattttgctgtcaattatgcattattcataggtaaatg 36855318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 10240761 - 10240701
Alignment:
Q  270 aagtccgaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatgcctattt 329  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||  ||||||| |||||||    
T  10240761 aagtctgaaagacagcaattttgctgtcaattatgcattatccaggggtaaatacctattt 10240701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 32632656 - 32632546
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||| ||||| |||||||||||  || |||||||| |||||||||||||   |||| |||  ||||| ||| ||||  || ||||||||||  ||    
T  32632656 gagacgataaagcttacactaaagtagatgagtcagactcaaagacaacccggtttaatctattcgtatcagtaaaatgaaaggcctcgagtaaggttat 32632557  T
Q  117 tgcctccccct 127  Q
    || ||||||||    
T  32632556 tgtctccccct 32632546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 455
Target Start/End: Original strand, 36855354 - 36855387
Alignment:
Q  422 ttcaattatttttaaatgaaaaaatgtcaagatt 455  Q
    ||||||||||||||||||||||| ||||||||||    
T  36855354 ttcaattatttttaaatgaaaaattgtcaagatt 36855387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 3068081 - 3068121
Alignment:
Q  365 atatatttaactacaactcagttgtctgtaactataagtgg 405  Q
    |||||||||||||||||| ||||| |||| |||||||||||    
T  3068081 atatatttaactacaacttagttgcctgtcactataagtgg 3068121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 16074679 - 16074639
Alignment:
Q  215 taagatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||||||||||||| ||| |||||||| ||||||||||||||    
T  16074679 taagatggttacgttcatggaacgcggcatccacattgcac 16074639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 3e-71; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 9328650 - 9328881
Alignment:
Q  19 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 118  Q
    ||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||    
T  9328650 gacgatagagcttgcactagagtatcagagtcagactccaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactg 9328749  T
Q  119 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 218  Q
    |||||||||||||||| |||||||||| ||||| |||||| ||||||||  ||||||||||  ||||||| |||||||| ||||| ||||| ||||||||    
T  9328750 cctccccctccaaaacagtcatattttcccgttgccatttcgtttgagctcgaataaattg-tcccgggaatctctaacacaacacgcaaatgatgtaag 9328848  T
Q  219 atggttacggtcaaggaacgcgacatccacatt 251  Q
    ||||||||||||| |||||||| ||||||||||    
T  9328849 atggttacggtcatggaacgcggcatccacatt 9328881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 16732074 - 16731836
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||| |||||||||||||||| |||||  || || |||||||||||||| |||| |||||||||| |||||||| | ||||| || ||||||||||| |     
T  16732074 gagatgatagagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggcctcgagtaaggctac 16731975  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||| ||||||||||||  ||  | |||||| ||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  16731974 tgcctccccctccaatactgtcatatttgccctctgccatttcgtttgagcccgaataaattgcccgcgggaatctctaacacaacatgcaaaagatgta 16731875  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | |||||| |||||| ||||| || ||||||||||||||    
T  16731874 atatggttgcggtcatggaacacggcatccacattgcac 16731836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 17710208 - 17709970
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||| |||||||||||||||| |||||  || || |||||||||||||| |||| |||||||||| |||||||| | ||||| || ||||||||||| |     
T  17710208 gagatgatagagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggcctcgagtaaggctac 17710109  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||| ||||||||||||  ||  | |||||| ||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  17710108 tgcctccccctccaatactgtcatatttgccctctgccatttcgtttgagcccgaataaattgcccgcgggaatctctaacacaacatgcaaaagatgta 17710009  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | |||||| |||||| ||||| || ||||||||||||||    
T  17710008 atatggttgcggtcatggaacacggcatccacattgcac 17709970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 16098631 - 16098393
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||||||| ||||||| |||| |||||  || || |||||||||||||||||||||||| ||||  |||||||||||||||  || || |||||||| |     
T  16098631 gagacgatggagcttgtactagagtagatgagtcggactcgaagacaacccggtcccatttgttagcatcagcaaattgaagggcctctagtaaggctac 16098532  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    | |||| |||||||||| |||||||||| | ||||||||||| ||||||||| ||||||||||||   ||||||||||||| ||||| |||||||| |||    
T  16098531 tacctctccctccaaaattgtcatatttgttcgtttccatttcgtttgagcccgaataaattgcctatgggagtctctaacacaacacgcaaaagaagta 16098432  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||||||||||||| ||||||   | ||||||||||||    
T  16098431 atatggttacggtcatggaacgatgcgtccacattgcac 16098393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 22289382 - 22289144
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||||||||| |||||||||| |||||| || || |||||||||||| ||||||||||| ||||| || | ||||| ||||| |||||||||||||| |     
T  22289382 gagacgatagcgcttgcactagagtagctgagtcggactcgaagacagcccggtcccatttgttcccaacggcaaagtgaatggcatcgagtaaggcaac 22289283  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
      ||||||||||||||||||||||||||   |||| |||||| || |||| | |||| |||||||| ||||| |||||||| ||||| || |||||||||    
T  22289282 cacctccccctccaaaactgtcatatttgctcgttgccatttcgtctgagtccgaatgaattgcccacgggaatctctaacacaacacgcgaaagatgta 22289183  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||| | ||||||| | |||||| ||||||||||||||    
T  22289182 atatgttgacggtcatgaaacgcggcatccacattgcac 22289144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 30493657 - 30493893
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 117  Q
    |||||||||||||||||||| ||||   || || ||||||||||||||| |||| |||||||||| |||||| || ||||   |||| |||||||| | |    
T  30493657 agacgatagagcttgcactagagtaattgagtcggactcgaagacaacctggtctcatctgttcatatcagctaagtgaacgacatcaagtaaggctact 30493756  T
Q  118 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 217  Q
    |||||||| ||||||||||||||| || || | | |||||| |||||||||||| ||||||||||  | || | |||||| ||||| |||||| ||||||    
T  30493757 gcctcccc-tccaaaactgtcatacttgtctgctgccatttcgtttgagcctgagtaaattgcccatgagaatttctaacacaacacgcaaaatatgtaa 30493855  T
Q  218 gatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||||||| |||| |||| |||||||||| |||||||    
T  30493856 gttggttacagtcatggaatgcgacatccatattgcac 30493893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 29200999 - 29201208
Alignment:
Q  15 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 114  Q
    ||||||||||||||||||||||| |||||| || |||||||||||||||||||| | ||||||||||||||||||||| |||||  |||| |||||        
T  29200999 cagagacgatagagcttgcactagagtagctgagtcagactcgaagacaacccgtttccatctgttcacatcagcaaagtgaatgacatcaagtaaacat 29201098  T
Q  115 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattg--cccccgggagtctctaacccaacatgcaaaaga 212  Q
      | |||||||||||||||||||||||||| |||| |  ||||| ||||||||| ||||||| ||  | | |  ||||||||||  ||||||||||||||    
T  29201099 gctacctccccctccaaaactgtcatatttgtccgctgtcatttcgtttgagcccgaataaactggccacacatgagtctctaatacaacatgcaaaaga 29201198  T
Q  213 tgtaagatgg 222  Q
    | ||| ||||    
T  29201199 tataatatgg 29201208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 49 - 254
Target Start/End: Complemental strand, 17877517 - 17877312
Alignment:
Q  49 tcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttcc 148  Q
    |||||||||||||||||||| | |||||||||| |||  | ||| ||||  || | ||||||||| | | ||||||||||||| ||||||||||||  ||    
T  17877517 tcagactcgaagacaacccgattccatctgttcgcatttgtaaagtgaagggccttgagtaaggctacttcctccccctccaatactgtcatatttcccc 17877418  T
Q  149 gtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccac 248  Q
    | | | |||| ||||||||  |||| || | |||  |||||||| |||| | ||| |||| | |||||| ||||||||  ||| ||||||||||||||||    
T  17877417 gctgcgatttcgtttgagcacgaatgaacttcccatgggagtctataacgccacacgcaacaaatgtaatatggttacaatcatggaacgcgacatccac 17877318  T
Q  249 attgca 254  Q
    ||||||    
T  17877317 attgca 17877312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 255
Target Start/End: Complemental strand, 1581711 - 1581518
Alignment:
Q  63 aacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccc-tccaaaactgtcatatttttccgtttccattttgt 161  Q
    |||||| || ||||||||| |||||||||| ||||  || ||||||||||| | ||| |||||| || |||||| | ||||||  ||  | |||||| ||    
T  1581711 aacccgatctcatctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcatcccccctcaaaaactataatatttgccctctgccatttcgt 1581612  T
Q  162 ttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||||||| | ||||| |  || | |||||||||| | ||||| ||||||||||||| ||||||| ||||| |||||||  ||||||||||||||    
T  1581611 ttgagcccggataaactatccgctggagtctctagcacaacacgcaaaagatgtaatatggttatggtcatggaacgcagcatccacattgcac 1581518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 217
Target Start/End: Original strand, 30824557 - 30824720
Alignment:
Q  53 actcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccg-tt 151  Q
    |||||||||||||| | |||||||||||| ||| || ||| ||||  || ||||||||||| | |||||  |||| |||||||||||||||| |||| |     
T  30824557 actcgaagacaacctgatcccatctgttcgcattagaaaagtgaagggcctcgagtaaggctactgcct--cccttcaaaactgtcatatttatccgctg 30824654  T
Q  152 tccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 217  Q
    ||  |||| ||| |||| |||||||||   | ||| |||||||||| |||||||||||||||||||    
T  30824655 tctttttttttttagcccgaataaattattcgcggcagtctctaacacaacatgcaaaagatgtaa 30824720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 3275176 - 3275082
Alignment:
Q  16 agagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaa 110  Q
    ||||| ||||| |||||||||| |||||| || || |||||||||||||||| |||| || ||||| || ||||||| |||||||||| ||||||    
T  3275176 agagatgatagcgcttgcactagagtagctgagtcggactcgaagacaacccagtcctatatgttcccaacagcaaagtgaatagcattgagtaa 3275082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 34578437 - 34578538
Alignment:
Q  130 aaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggt 229  Q
    |||||||||||||||   ||||  ||||| || |||||| ||||||||||||| ||||| | || ||| ||||| ||||||||||||| ||| | |||||    
T  34578437 aaaactgtcatatttgctcgttgtcatttcgtctgagcccgaataaattgcccacgggaatttcgaacacaacacgcaaaagatgtaatatgttaacggt 34578536  T
Q  230 ca 231  Q
    ||    
T  34578537 ca 34578538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 20878316 - 20878260
Alignment:
Q  422 ttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgtcgg 479  Q
    ||||||||||||||||| |||||||||  ||||||||||| | |||| ||||||||||    
T  20878316 ttcaattatttttaaat-aaaaaatgtagagattataacgtggcctccgaattgtcgg 20878260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 479
Target Start/End: Original strand, 28031464 - 28031520
Alignment:
Q  422 ttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgtcgg 479  Q
    |||||||||||||||||| |||| |||||||||||||||| | |||| ||||| ||||    
T  28031464 ttcaattatttttaaatg-aaaattgtcaagattataacgaggcctccgaattatcgg 28031520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 31446990 - 31446949
Alignment:
Q  365 atatatttaactacaactcagttgtctgtaactataagtggt 406  Q
    |||||||||||||||||| |||||| ||| ||||||||||||    
T  31446990 atatatttaactacaacttagttgtttgtcactataagtggt 31446949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 38641382 - 38641422
Alignment:
Q  422 ttcaattatttttaaatgaaaaaatgtcaagattataacgg 462  Q
    ||||||||||||||||||||| | |||||| ||||||||||    
T  38641382 ttcaattatttttaaatgaaatattgtcaaaattataacgg 38641422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 4e-70; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 7127364 - 7127130
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |     
T  7127364 gagacgaaagagcttgcactaaagtagcatagtcagactcgaaggcaacccggtcccatctgttcacatcagcaaagtgaatagcatcgagtaaggctac 7127265  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    | ||||||||||||||||| ||||||||  ||||||||||||  |||| ||  ||||||||| |||||| ||||||||||| ||||||||| | ||||||    
T  7127264 tacctccccctccaaaactttcatatttgcccgtttccatttcatttgtgcacgaataaatttcccccgagagtctctaacacaacatgcagaggatgta 7127165  T
Q  217 agatggttacggtcaaggaacgcgacatccacatt 251  Q
    ||| ||||||| ||| |||||||| ||||||||||    
T  7127164 agacggttacgttcatggaacgcggcatccacatt 7127130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 8451169 - 8451403
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||| |||||||||||||||||  || |||||||||||||||||||||||||||| |||||||||||| || ||||| | ||||||||| || |     
T  8451169 gagacgataaagcttgcactaaagtagatgagtcagactcgaagacaacccggtcccatccgttcacatcagcgaagtgaatggaatcgagtaaagctac 8451268  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||| ||||||||||||  ||| |||| ||||||||||||| |||||||||| || |  ||||||||||| |||||| |||||||||||    
T  8451269 tgcctccccctccaacactgtcatatttgcccgcttcctttttgtttgagcccgaataaattgtccacaagagtctctaacacaacatccaaaagatgta 8451368  T
Q  217 agatggttacggtcaaggaacgcgacatccacatt 251  Q
    | ||||||||||||| |||||||| ||||||||||    
T  8451369 aaatggttacggtcatggaacgcggcatccacatt 8451403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 478102 - 478336
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||||||||||||||| ||||| ||| ||||| ||||||| ||||||||||||||| ||||||| |||||| ||||| |||||||||||||| |     
T  478102 gagacgatagagcttgcactagagtagtagagtcagattcgaagataacccggtcccatctattcacattagcaaagtgaatggcatcgagtaaggctac 478201  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||||||||||||||||  ||||| |||||||||||||||| | |||||||| ||  || | |||||||| |||||  ||||||||||     
T  478202 tgcctccccctccaaaactgtcatatttgcccgttgccattttgtttgagcccggataaattgaccatggaaatctctaacacaacacacaaaagatgtt 478301  T
Q  217 agatggttacggtcaaggaacgcgacatccacatt 251  Q
    ||||||||  ||||| ||||||   ||||||||||    
T  478302 agatggttgtggtcatggaacgttgcatccacatt 478336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 23854073 - 23853835
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||||||||||||||| ||| |  || || |||||||||||||| | ||| ||||||||  ||||| |||| ||||| || || |||||||| |     
T  23854073 gagacgatagagcttgcactagagttgatgagtcggactcgaagacaactcagtctcatctgttagcatcaacaaagtgaatggcctcaagtaaggctac 23853974  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    |||||| |||||||||||||||||||||||||| |  ||||| |||||| || ||||||||||||| ||||||||||||||  |||| ||||||||||||    
T  23853973 tgcctcaccctccaaaactgtcatatttttccgctgtcatttcgtttgaacccgaataaattgcccacgggagtctctaacataacacgcaaaagatgta 23853874  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | || |||||||||| |||||||| | ||||||| ||||    
T  23853873 atatagttacggtcatggaacgcggcgtccacatcgcac 23853835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 185637 - 185842
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||| ||||||||| |||| ||||||| |||||||||||| |     
T  185637 gagacgaaagagcttgcactaaagtagcagagtcagactcgtagacaacccggttccatctattcacatcaacaaagtgaatagtatcgagtaaggctac 185736  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    | ||| ||||||||||||||||||||||  |||||||||||| |||||||||   ||||||| ||| | ||||||||| || |||| |||| ||||||||    
T  185737 ttcct-cccctccaaaactgtcatatttgcccgtttccatttcgtttgagcccagataaatttccctc-ggagtctcttacacaacgtgcagaagatgta 185834  T
Q  217 agatggtt 224  Q
    ||| ||||    
T  185835 agacggtt 185842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 13415162 - 13414926
Alignment:
Q  19 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 118  Q
    ||||||| | ||||||||| ||||| |||||| ||||| |||||||| || |||||||||||  |||| |||||  |||  || ||||||||||| | ||    
T  13415162 gacgatataccttgcactagagtagaagaatcggactcaaagacaactcgatcccatctgtttgcatccgcaaaaggaagggcctcgagtaaggctactg 13415063  T
Q  119 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaag 218  Q
    |||||||||||||||||||||||||| |||| | |||||| ||||||||| ||||||||||||| ||  |||||||||   ||||  |||||| |||||     
T  13415062 cctccccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaattgcccgcgaaagtctctaaaaaaacacacaaaagttgtaat 13414963  T
Q  219 atggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||||||||| ||| ||||| |||||||||||||||||    
T  13414962 atggttacgttcatggaacacgacatccacattgcac 13414926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 40588778 - 40588940
Alignment:
Q  19 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattg 118  Q
    |||||||||| || ||||| |||||  ||||||||||| |||||||||||||| ||||||||  |||| |||||  |||  || ||||||| ||| | ||    
T  40588778 gacgatagagtttacactagagtagatgaatcagactcaaagacaacccggtctcatctgtttgcatccgcaaaacgaagggcctcgagtacggctactg 40588877  T
Q  119 cctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcc 181  Q
    ||||||||||||||||||| ||||||  ||| | |||||| ||||||||| ||||||||||||    
T  40588878 cctccccctccaaaactgttatatttgcccgctgccatttcgtttgagcccgaataaattgcc 40588940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 37712214 - 37711990
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 117  Q
    |||| ||||||||| ||||| ||||||||  ||| ||| ||||| |||| | || ||||||||||||||| |||| ||||| ||||    ||| || | |    
T  37712214 agacaatagagcttacactagagtagcagggtcaaactagaagataacctgatctcatctgttcacatcaacaaagtgaatggcat----taaagctact 37712119  T
Q  118 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 217  Q
     ||||||| || |||||||||||||||| ||| |  ||||| |||| |||   |||||||||||| |  |||| |||||| ||||| |||||| ||||||    
T  37712118 acctccccttc-aaaactgtcatattttcccgctgtcatttcgttttagctcaaataaattgcccacacgagtttctaacacaacacgcaaaaaatgtaa 37712020  T
Q  218 gatggttacggtcaaggaacgcgacatcca 247  Q
    |||  |||| |||| || |||| |||||||    
T  37712019 gataattacagtcatggtacgcaacatcca 37711990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 9496887 - 9496797
Alignment:
Q  52 gactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatt 143  Q
    ||||| |||||||| |||||||||  |||||||||| |||| |||||  |||| |||||||| | |||||| ||||||||||||||||||||    
T  9496887 gactcaaagacaacacggtcccata-gttcacatcaacaaagtgaatgtcatcaagtaaggctactgcctcaccctccaaaactgtcatatt 9496797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 7888558 - 7888598
Alignment:
Q  422 ttcaattatttttaaatgaaaaaatgtcaagattataacgg 462  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  7888558 ttcaattatttttaaaggaaaaattgtcaagattataacgg 7888598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 598284 - 598337
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtc 71  Q
    |||||||||||||||||||| ||||||  | || |||| |||||||||||||||    
T  598284 agacgatagagcttgcactagagtagctaagtccgacttgaagacaacccggtc 598337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 3606785 - 3606874
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcga 106  Q
    |||||||||||| ||| |||||||| |  || || |||| ||| |||||  ||| ||||||||||||||||  ||||||||| |||||||    
T  3606785 gagacgatagagtttgtactaaagttgttgagtcggacttgaaaacaacttggttccatctgttcacatcaagaaattgaatggcatcga 3606874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 20684134 - 20684194
Alignment:
Q  270 aagtccgaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatgcctattt 329  Q
    ||||||| |||||||||||||| ||| ||||| |||||| | |||||||||||| ||||||    
T  20684134 aagtccggaagacaacaattttactgccaattatgcattgttcataggtaaatgtctattt 20684194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 25682792 - 25682554
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||||||||||||||| |||| |||||| || ||| ||||||||||| ||||||||||||||||||||| |||||| |||||  ||||||||||||| |     
T  25682792 gagacgatagagcttgtactagagtagctgagtcaaactcgaagacagcccggtcccatctgttcacattagcaaagtgaatgacatcgagtaaggctac 25682693  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||| ||||||||||||  ||||| |||||| |||||||||   ||||||||||| |||||||||||||| ||||| ||||||||||||    
T  25682692 tgcctccccctccaacactgtcatatttgcccgttgccatttcgtttgagcccagataaattgcccacgggagtctctaacacaacacgcaaaagatgta 25682593  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||||||||||| ||| | ||| || ||||||||||||||    
T  25682592 agatggttacgttcatgaaacacggcatccacattgcac 25682554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 44527394 - 44527156
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||| |||||||||||||| | |||||  || || |||||||||||||||||||||||||||||  |||||||||| ||||  || || |||||||| |     
T  44527394 gagatgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggcctctagtaaggctac 44527295  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    |||||||||||||||||||||||||||| |||| | |||||||||||||||| ||||||||||||| |  ||||||||||| ||||| ||||||||||||    
T  44527294 tgcctccccctccaaaactgtcatatttgtccgctgccattttgtttgagcccgaataaattgcccacaagagtctctaacacaacacgcaaaagatgta 44527195  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | |||||||| |||| |||||||| | ||||||||||||    
T  44527194 atatggttacagtcatggaacgcggcgtccacattgcac 44527156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 36733837 - 36733604
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||| ||||||||||| |||   ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||| | |     
T  36733837 gagacgatatagcttgcactagagttatagagtcagactcgaagacaacccggtcccatttgttcacatcagcaaagtgaataacattgagtaagactac 36733738  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    |||||||||||||||||||| |||||||  |||||  ||||||||||||||| |||||||||| || || ||||||||||| |||||  |||||| ||||    
T  36733737 tgcctccccctccaaaactgccatatttacccgttgtcattttgtttgagcccgaataaattgtccacgagagtctctaacacaacacacaaaaggtgta 36733638  T
Q  217 agatggttacggtcaaggaacgcgacatccacat 250  Q
    |||||||||  |||| | |||||| |||||||||    
T  36733637 agatggttatagtcatgaaacgcggcatccacat 36733604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 48166377 - 48166157
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 117  Q
    |||| |||||||||||| || |||||| ||||||||||||||||||||||| |||||| | ||||||| |||||| |||||  ||||||||||||| |||    
T  48166377 agactatagagcttgcaatagagtagctgaatcagactcgaagacaacccgatcccatatattcacataagcaaagtgaatgacatcgagtaaggctatt 48166278  T
Q  118 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 217  Q
    | ||||| |||||||||||||||||||   || | ||||||  |||||||| |||||||||| || |||||||||||||| |||||  ||||||||||||    
T  48166277 gtctcccactccaaaactgtcatatttgctcgctgccatttcatttgagcccgaataaattgaccacgggagtctctaacacaacacacaaaagatgtaa 48166178  T
Q  218 gatggttacggtcaaggaacg 238  Q
    |||||||||||||| ||||||    
T  48166177 gatggttacggtcatggaacg 48166157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 48949770 - 48950008
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||||||||| |||||||||| |||||| || |   ||||||||||||||||||||||||||||| || || |||| ||||| |||||||||||||| |     
T  48949770 gagacgatagcgcttgcactagagtagctgagttgaactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatcgcatcgagtaaggcaac 48949869  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||||||| ||||||||   |||| |||||| ||||||||| |||| |||||||  |||||||||||||| ||||| || |||||||||    
T  48949870 tgcctccccctccaaaactttcatatttgctcgttgccatttcgtttgagcccgaatgaattgccaacgggagtctctaacacaacacgcgaaagatgta 48949969  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||| | ||||||| | |||||| ||||||||||||||    
T  48949970 atatgttgacggtcatgaaacgcggcatccacattgcac 48950008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 51113458 - 51113218
Alignment:
Q  15 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 114  Q
    |||||||||||| |||||||||| |||||| || || |||||||||||||||||||||||||||||| || || |||| |||||  |||||||||||||     
T  51113458 cagagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatgacatcgagtaaggca 51113359  T
Q  115 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatg 214  Q
    | |||||||||||||||||| || ||||||   |||| |||||| ||||||| | |||| |||||||| |||||||||||||| ||||| || |||||||    
T  51113358 actgcctccccctccaaaacggttatatttgctcgttgccatttcgtttgagtccgaatgaattgcccacgggagtctctaacacaacacgcgaaagatg 51113259  T
Q  215 taagatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||| ||| | ||||||| | ||| || ||||||||||||||    
T  51113258 taatatgttgacggtcatgaaacacggcatccacattgcac 51113218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 4395299 - 4395062
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||||||||||||||| |||||  || |  |||||||||| |||| |||||||||| ||| |||||||||| ||||  || ||||||||||| |     
T  4395299 gagacgatagagcttgcactagagtagatgagttggactcgaagataacctggtcccatctattcgcatcagcaaagtgaagggcctcgagtaaggctag 4395200  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||| || |||||| ||||||||  ||| | |||||| | ||||||| | ||||||||||| || ||||||||||| || |||||||||| |||     
T  4395199 tgcctccccttc-aaaactctcatatttgcccgctgccatttcgattgagcccggataaattgcccacgagagtctctaacacagcatgcaaaagttgtg 4395101  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||||||||||||| |||||||| | ||||||||||||    
T  4395100 atatggttacggtcatggaacgcggcttccacattgcac 4395062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 52109594 - 52109361
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||| |||||||||| |||| |||||  |||||| |||| ||||||||||  |||||||||||  |||||||||| ||||   | ||||||||||| |     
T  52109594 gagacaatagagcttgtactagagtagatgaatcacactcaaagacaaccca-tcccatctgttagcatcagcaaagtgaaggacctcgagtaaggctac 52109496  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||| |||||||||||||   ||||||||  ||| | |||||| |||||||||||||||||||| || | |||||||||||| ||||||||||||||| ||    
T  52109495 tgcatccccctccaaaatgatcatatttgcccgctgccatttcgtttgagcctgaataaattgtccacaggagtctctaacacaacatgcaaaagatata 52109396  T
Q  217 agatggttacggtcaaggaacgcgacatccacatt 251  Q
    ||||| ||||||||| ||||| | || ||||||||    
T  52109395 agatgattacggtcatggaacacaacgtccacatt 52109361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 5609480 - 5609242
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||||||||||| |||||||| |||||  || ||  |||||||||||||||| || ||||||||| || || |||| ||||   | ||||||||||| |     
T  5609480 gagacgatagagtttgcactagagtagatgagtcgaactcgaagacaacccgatctcatctgttcgcaacatcaaagtgaaggacctcgagtaaggctac 5609381  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||| ||||||| |||||||| |||| |  |||   ||||||||| ||||||||||| |  | ||||||||| | || || || |||| ||||    
T  5609380 tgcctcccccttcaaaactatcatatttgtccgctgtcatagagtttgagcccgaataaattgctcgtgtgagtctctagcacagcacgcgaaagttgta 5609281  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | |||||||| |||| |||||||||||||||||||||||    
T  5609280 atatggttacagtcatggaacgcgacatccacattgcac 5609242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 16816846 - 16817083
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||||| |||| |||| |||| |||||  || || |||||||||||||||||||||||||||||  |||||||||| ||||  || ||||||||||| |     
T  16816846 gagacggtagaacttgaactagagtagacgagtcggactcgaagacaacccggtcccatctgtttgcatcagcaaaatgaagggcctcgagtaaggctac 16816945  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||| ||||||||||| ||||||||||  ||  | |||||||| ||||||  ||||||||||| | || ||||||||||  ||| |  |||||||||||    
T  16816946 tgcct-cccctccaaaattgtcatatttgcccactgccattttgattgagctcgaataaattgcacgcgagagtctctaaaacaatacacaaaagatgta 16817044  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | |||||||| | || |||||||| | ||| ||||||||    
T  16817045 atatggttacagacatggaacgcggcgtccgcattgcac 16817083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 44602893 - 44602766
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||| |||||||||||||||| |||||| || | |||||||||| |||||||||| |||||||||||||||| ||| |||||  ||||||||||| | |     
T  44602893 gagatgatagagcttgcactagagtagcggagttagactcgaaggcaacccggtctcatctgttcacatcagtaaagtgaatgacatcgagtaagactaa 44602794  T
Q  117 tgcctccccctccaaaactgtcatattt 144  Q
    || |||||||||||||| ||||||||||    
T  44602793 tgtctccccctccaaaattgtcatattt 44602766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 254
Target Start/End: Complemental strand, 24538544 - 24538414
Alignment:
Q  124 ccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggt 223  Q
    ||||||||||||||| |||||  | | | ||| || ||||||||| |||||||||  || |||||||||||||| |||||  |||||||| |||  ||||    
T  24538544 ccctccaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattatccacgggagtctctaacacaacacacaaaagatctaacttggt 24538445  T
Q  224 tacggtcaaggaacgcgacatccacattgca 254  Q
    |||||| |  ||||||| |||||||||||||    
T  24538444 tacggttatagaacgcggcatccacattgca 24538414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 405
Target Start/End: Original strand, 22572109 - 22572257
Alignment:
Q  255 catttttctgtaggt--aagtccgaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatgcctatttttctatggttgaaactcttatt 351  Q
    |||||||||||||||  |||||  ||||||| ||||||| |||| |||| ||||||||||||||||||||||   ||| ||| | | | ||| || ||||    
T  22572109 catttttctgtaggttaaagtctaaaagacatcaattttactgttaattatgcattatccataggtaaatgc---tttgtctgtcggtaaaaatcatatt 22572205  T
Q  352 taaacgattacttatatatttaactacaactcagttgtctgtaactataagtgg 405  Q
    ||||| |||||    |||||||||||||||| |||| ||| |||||||||||||    
T  22572206 taaaccattac--ccatatttaactacaacttagttttctataactataagtgg 22572257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 2885363 - 2885313
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccg 68  Q
    |||||||||||||||||||| |||||| || || |||||||||||||||||    
T  2885363 agacgatagagcttgcactagagtagctgagtctgactcgaagacaacccg 2885313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 480
Target Start/End: Original strand, 8904841 - 8904899
Alignment:
Q  422 ttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgtcggg 480  Q
    ||||||||||||||||||||||| |||||||||| ||| | | |||| |||||||||||    
T  8904841 ttcaattatttttaaatgaaaaattgtcaagattgtaaagagtcctccgaattgtcggg 8904899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 8904759 - 8904812
Alignment:
Q  277 aaagacaacaattttgctgtcaatt-tgcattatccataggtaaatgcctattt 329  Q
    ||||||| ||||||| | ||||||| ||||||||||||||||||||| ||||||    
T  8904759 aaagacatcaattttaccgtcaattatgcattatccataggtaaatgtctattt 8904812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 487
Target Start/End: Original strand, 14615076 - 14615140
Alignment:
Q  422 ttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgtcgggaatgacc 487  Q
    ||||||| ||||||||||||||  |||||| |||| ||| |||||||| |||||||||||| ||||    
T  14615076 ttcaattctttttaaatgaaaat-tgtcaaaattacaactggacctctaaattgtcgggaacgacc 14615140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 6e-63; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 88700 - 88462
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||||||||||||||| |||||  || || |||||||||||||||||||||||||||||  ||||| |||| ||||  || ||||||||||| |     
T  88700 gagacgatagagcttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcaacaaagtgaagggcctcgagtaaggctac 88601  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||||||||||||||||  || || ||||||  |||||||| ||||||||||||| || ||||||||||| ||||||||||||| ||||    
T  88600 tgcctccccctccaaaactgtcatatttgcccattgccatttcatttgagcccgaataaattgcccgcgagagtctctaacacaacatgcaaaagttgta 88501  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||||||||||||| |||||||  ||||||||||||||    
T  88500 atatggttacggtcatggaacgcagcatccacattgcac 88462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 44017364 - 44017570
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||||||||||||||||||||||||| | || |||||||||||||||||  |||| ||| ||||||||| |||||  ||||| |||||||||||||   |    
T  44017364 gagacgatagagcttgcactaaagtaacggagtcagactcgaagacaacttggtctcatatgttcacattagcaacgtgaatggcatcgagtaaggttgt 44017463  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    || |||||||||||||||||||||||||   || |  |||||| |||||||| ||||||||||||| |||||||||||||| ||||| || |||||||||    
T  44017464 tgtctccccctccaaaactgtcatatttgcacggtgtcattttatttgagcccgaataaattgcccacgggagtctctaacacaacacgcgaaagatgta 44017563  T
Q  217 agatggt 223  Q
    |||||||    
T  44017564 agatggt 44017570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 34695950 - 34696167
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||||||||  |||||||||| |||||| || || ||||||||||||||||| |||||||| || ||||||||||| ||||| || | ||||||||| |     
T  34695950 gagacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggccttgagtaaggctac 34696049  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||||||||||||||||  ||| | |||  | | ||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  34696050 tgcctccccctccaaaactgtcatatttgcccgctgcca--tcgattgagcccgaataaattgcccacgggagtctctaacgcaacacgcaaaagatgta 34696147  T
Q  217 agatggttacggtcaaggaa 236  Q
    | ||| ||| ||||| ||||    
T  34696148 atatgcttatggtcatggaa 34696167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 34718362 - 34718579
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||||||||  |||||||||| |||||| || || ||||||||||||||||| |||||||| || ||||||||||| ||||| || | ||||||||| |     
T  34718362 gagacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggccttgagtaaggctac 34718461  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||||||||||||||||  ||| | |||  | | ||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  34718462 tgcctccccctccaaaactgtcatatttgcccgctgcca--tcgattgagcccgaataaattgcccacgggagtctctaacgcaacacgcaaaagatgta 34718559  T
Q  217 agatggttacggtcaaggaa 236  Q
    | ||| ||| ||||| ||||    
T  34718560 atatgcttatggtcatggaa 34718579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 12130689 - 12130922
Alignment:
Q  22 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcct 121  Q
    ||||||||||| |||| |||||  || ||||||||||||| |||||| | |||||| ||  |||||||||| |||| ||| || |||||||| | |||||    
T  12130689 gatagagcttggactagagtagatgagtcagactcgaagataacccgattccatctatttgcatcagcaaagtgaagagcctcaagtaaggctactgcct 12130788  T
Q  122 ccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatg 221  Q
    |||||||||| ||| ||||||||   || |  ||||| ||||||||| |||||| |||||| |||||||||||||| |||||  ||||||||  || |||    
T  12130789 ccccctccaacactatcatatttgctcgctgtcatttcgtttgagcccgaataatttgcccgcgggagtctctaacacaacacccaaaagatagaatatg 12130888  T
Q  222 gttacggtcaaggaacgcgacatccacattgcac 255  Q
    |||||||||| |||||| | ||||||||||||||    
T  12130889 gttacggtcatggaacggggcatccacattgcac 12130922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 55 - 255
Target Start/End: Original strand, 18345571 - 18345770
Alignment:
Q  55 tcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgtttcc 154  Q
    ||||||||||  || |||||||||||  |||||||||| ||||  || ||||||||||| | |||||||||||| ||||||||||||||| |||||| ||    
T  18345571 tcgaagacaattcgatcccatctgttagcatcagcaaagtgaagggcctcgagtaaggctactgcctccccctc-aaaactgtcatatttgtccgttacc 18345669  T
Q  155 attttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattgca 254  Q
    |||| |||||||    |||||||| ||| ||| |||||||||| ||||| |||||||| |||| ||||||||| ||| ||||||   | |||||||||||    
T  18345670 atttcgtttgagttcaaataaattacccacggaagtctctaacacaacacgcaaaagaagtaatatggttacgctcatggaacgttgcgtccacattgca 18345769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 74 - 177
Target Start/End: Complemental strand, 9710013 - 9709910
Alignment:
Q  74 atctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaat 173  Q
    |||||||| || | ||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||| | |||| |||||| ||||||||||||||    
T  9710013 atctgttcccaaccgcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtcatatttgttcgttgccatttcgtttgagcctgaat 9709914  T
Q  174 aaat 177  Q
    ||||    
T  9709913 aaat 9709910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 26198824 - 26198637
Alignment:
Q  16 agagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcga 115  Q
    |||||||||||||||||||||| |||||| || || |||||||||||  |||||        |||||||| |||||| | ||| ||||| || ||||| |    
T  26198824 agagacgatagagcttgcactagagtagctgagtcggactcgaagac--cccgg--------gttcacattagcaaagtaaatggcatcaag-aaggcta 26198736  T
Q  116 ttgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatg 214  Q
     ||| |||||||||||||||||||||||| | || | ||||||| |||||||  ||||||||||||| |  ||||||||||| || ||  |||||||||    
T  26198735 ctgcatccccctccaaaactgtcatatttgttcgctaccattttatttgagctcgaataaattgcccacatgagtctctaacacagcacacaaaagatg 26198637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 1418025 - 1418154
Alignment:
Q  15 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 114  Q
    ||||||| |||||||||| |||| |||||  || ||||||||||||||||||| ||||||||||||  |||||||||||  |||  | |||||||||||     
T  1418025 cagagacaatagagcttgaactagagtagatgagtcagactcgaagacaacccagtcccatctgtttgcatcagcaaatcaaattacctcgagtaaggct 1418124  T
Q  115 attgcctccccctccaaaactgtcatattt 144  Q
    | || ||| |||| || ||| |||||||||    
T  1418125 actgtctctcccttcataaccgtcatattt 1418154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 22845677 - 22845602
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaa 92  Q
    ||||||||||||||||||||| |||||   | |  |||||||||||||||||||||||||||||| ||||||||||    
T  22845677 gagacgatagagcttgcactagagtagattagttggactcgaagacaacccggtcccatctgttcgcatcagcaaa 22845602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 9710094 - 9710036
Alignment:
Q  19 gacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatct 77  Q
    ||||||||||||||||||| |||| || | |||||||||||||||||||||||||||||    
T  9710094 gacgatagagcttgcactagagtatcaaagtcagactcgaagacaacccggtcccatct 9710036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 13109916 - 13109987
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagc 89  Q
    |||||||||||||| ||||| ||||| ||| || |||||||||||||||  |||||||||| || |||||||    
T  13109916 agacgatagagcttccactagagtagaagagtcggactcgaagacaaccatgtcccatctgatcgcatcagc 13109987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 14827218 - 14827126
Alignment:
Q  20 acgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaagg 112  Q
    |||||||||||||||||| ||||||  | ||||| || |||||||| || || ||||| |||| ||||| ||| |||||  ||||||||||||    
T  14827218 acgatagagcttgcactagagtagctaagtcagattcaaagacaactcgatctcatctattcatatcagtaaagtgaatgacatcgagtaagg 14827126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 407
Target Start/End: Complemental strand, 6298985 - 6298926
Alignment:
Q  348 tatttaaacgattacttatatatttaactacaactcagttgtctgtaactataagtggtg 407  Q
    ||||||||| |||||| ||||||||||||| || | |||||||| | |||||||||||||    
T  6298985 tatttaaaccattactcatatatttaactataatttagttgtctcttactataagtggtg 6298926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 11673525 - 11673478
Alignment:
Q  276 gaaagacaacaattttgctgtcaatt-tgcattatccataggtaaatg 322  Q
    |||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  11673525 gaaagacatcaattttgctgtcaattatgcattatccataagtaaatg 11673478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 4e-61; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 15606039 - 15606278
Alignment:
Q  16 agagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcga 115  Q
    |||||||||||||||||||||| |||||| || || |||| ||||||||||||||||||| ||||| ||||| |||| ||||| |||||||||||||| |    
T  15606039 agagacgatagagcttgcactagagtagctgagtcggacttgaagacaacccggtcccatttgttcccatcaacaaagtgaatggcatcgagtaaggcta 15606138  T
Q  116 ttgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgt 215  Q
     |||||||||||||||||||||||| |||| ||| | |||||||||||||||| |||||| ||||||  ||||||||||||| ||||| | |||||||||    
T  15606139 ctgcctccccctccaaaactgtcatgttttcccgctgccattttgtttgagcccgaataagttgcccatgggagtctctaacacaacacgaaaaagatgt 15606238  T
Q  216 aagatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    || ||||||||| ||  | || ||| ||||||||||||||    
T  15606239 aatatggttacgatcgtgaaatgcggcatccacattgcac 15606278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 28107280 - 28107059
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||||||||||||||| |||||| || | |||||||||||||||  | |||||||| |||| ||  ||||| ||||| ||||| |||||||| |     
T  28107280 gagacgatagagcttgcactagagtagcggagttagactcgaagacaacgtgatcccatctattcatatttgcaaagtgaatggcatcaagtaaggctac 28107181  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    |||||||||||||||||||||||||| | |||| | |||||| |||||||||||||||||||| || |||||||||||||| |||||  | |||||||||    
T  28107180 tgcctccccctccaaaactgtcatatctgtccgctgccatttcgtttgagcctgaataaattgtccacgggagtctctaacacaacacacgaaagatgta 28107081  T
Q  217 agatggttacggtcaaggaacg 238  Q
    ||||||||||| ||| ||||||    
T  28107080 agatggttacgatcatggaacg 28107059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 19690923 - 19691073
Alignment:
Q  15 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcg 114  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||| |||||  |||||| ||||||     
T  19690923 cagagacgatagagcttgcactaaagtagctgagtcagactcgaagacaactcggtcacatctgttcacatcagcaaagtgaatgacatcgaataaggct 19691022  T
Q  115 attgcctccccctccaaaactgtcatatttttccgtttccattttgtttga 165  Q
    ||||||||||| |||||||| ||||||||| ||||||  ||||| ||||||    
T  19691023 attgcctccccttccaaaacggtcatatttgtccgttgtcatttcgtttga 19691073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 14680303 - 14680062
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||| ||||||||||||| || |||||  || || || || |||||||| |||| |||||||||  |||||||| | ||||  || ||||||||||| |     
T  14680303 gagatgatagagcttgcaatagagtagacgagtcggaatcaaagacaactcggttccatctgtttgcatcagcagagtgaagggcctcgagtaaggctac 14680204  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgc---ccccgggagtctctaacccaacatgcaaaagat 213  Q
    ||||||||||||||| ||||||||||||| ||| | ||||||  ||||||||  ||||||||||   || |||||||||||||| |||||||||||||||    
T  14680203 tgcctccccctccaatactgtcatattttcccgctgccatttcatttgagccataataaattgcccgccgcgggagtctctaacacaacatgcaaaagat 14680104  T
Q  214 gtaagatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    ||||  ||||| |||||| ||||||||  |||||||||||||    
T  14680103 gtaatgtggttgcggtcatggaacgcggtatccacattgcac 14680062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 30802040 - 30802201
Alignment:
Q  20 acgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgc 119  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||  ||||||| | |||||||| ||||| | ||| ||||| |||||||| | |||    
T  30802040 acgatagagcttgcactaaagtagctgaatcggactcgaagacaacctagtcccattttttcacatctgcaaagtaaatggcatctagtaaggctactgc 30802139  T
Q  120 ctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcc 181  Q
    ||||||| |||||||||||||||||  ||| | ||||||||||| |||| ||||||||||||    
T  30802140 ctcccccaccaaaactgtcatatttgcccgctgccattttgtttaagcccgaataaattgcc 30802201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 15053222 - 15053430
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 117  Q
    ||||||||| | |||||||| |||||| || || |||||||||||||||  ||| ||| | ||||| |||||||   |||| |||||||||||||| | |    
T  15053222 agacgatagcgtttgcactagagtagctgagtcggactcgaagacaaccttgtctcattttttcacgtcagcaaggcgaatggcatcgagtaaggctact 15053321  T
Q  118 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 217  Q
    |||||||||||||| ||| ||||||||  ||| |  ||| ||||||||||| |||||||||| || | | |||||||||| ||||| |||||||||||||    
T  15053322 gcctccccctccaacactatcatatttacccgctgtcatcttgtttgagcccgaataaattgtccactgaagtctctaacacaacacgcaaaagatgtaa 15053421  T
Q  218 gatggttac 226  Q
    |||||||||    
T  15053422 gatggttac 15053430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 29368102 - 29368296
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||||||||||||||| |||||  || || |||||||| |||    |||||||||| ||  |||||||||| ||||  || ||||||||||  ||    
T  29368102 gagacgatagagcttgcactatagtagatgagtcggactcgaaaacagttaggtcccatctattagcatcagcaaagtgaagggcctcgagtaaggatat 29368201  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagat 213  Q
    |||||||||||||||||||||||||||| |||| | ||||||  |||||||  |||||||||| || || ||||||| ||| ||||| |||||||||    
T  29368202 tgcctccccctccaaaactgtcatatttatccgctgccatttcttttgagc--gaataaattgtccacgagagtctcaaacacaacacgcaaaagat 29368296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 11731715 - 11731873
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||| ||||||||||||||| | |   ||| || ||||||||||||||| | ||| || ||||| |||||||||| |||| ||  |||||  ||||       
T  11731715 gagacaatagagcttgcactatattgaaagagtcggactcgaagacaacctgttcctatatgttctcatcagcaaagtgaagagtctcgag--aggctgc 11731812  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaatt 178  Q
    ||||||||| ||||||||||||||||||  ||| | |||||||||||||||| | |||||||    
T  11731813 tgcctcccc-tccaaaactgtcatatttgcccgctgccattttgtttgagcccggataaatt 11731873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 9e-59; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 42340323 - 42340530
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||| |||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||| ||||| |||||  ||||||||| ||| ||    
T  42340323 gagacgacagagcttgcactaaagtagctgagtctgactcgaagacaactcggtcccatctgttcacatctgcaaagtgaatgacatcgagtagggctat 42340422  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||||| |||||||||| |  ||| | |||||||||||||||| |||||||||| || || ||||||||||| ||||| ||||||||||||    
T  42340423 tgcctccccctccaacactgtcatatctgcccgctgccattttgtttgagcccgaataaattgtccacgagagtctctaacacaacacgcaaaagatgta 42340522  T
Q  217 agatggtt 224  Q
    ||||||||    
T  42340523 agatggtt 42340530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 53497173 - 53496935
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||||||||||||| | |||||  || || |||||||||||||||||||||||||||||  |||||||||| ||||  || || |||||||| |     
T  53497173 gagacgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggcctctagtaaggctac 53497074  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    |||||||||||| |||||||||| |||| |||| |  ||||||||||||||| ||||||||||||| |  ||||||||||| ||||| ||||||||||||    
T  53497073 tgcctccccctcaaaaactgtcacatttgtccgctgtcattttgtttgagcccgaataaattgcccacaagagtctctaacacaacacgcaaaagatgta 53496974  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||||||||||||| |||||||| | ||||||||||||    
T  53496973 atatggttacggtcatggaacgcggcgtccacattgcac 53496935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 55199651 - 55199414
Alignment:
Q  18 agacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgatt 117  Q
    ||||||||| |||||||| | |||||| || || |||| ||||||||||||||||||||||||  || || |||| ||||| |||||||||||||| | |    
T  55199651 agacgatagcgcttgcaccagagtagctgagtcggacttgaagacaacccggtcccatctgtttccaacaacaaagtgaatggcatcgagtaaggcaact 55199552  T
Q  118 gcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaa 217  Q
    ||||||||||||||||||||||||||| || | |  ||||| ||||||||| |||| |||||||| |||||||||||||| ||||| || ||||||||||    
T  55199551 gcctccccctccaaaactgtcatatttatcagctgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaacacaacacgcgaaagatgtaa 55199452  T
Q  218 gatggttacggtcaaggaacgcgacatccacattgcac 255  Q
     ||  | ||||||| | |||| | ||||||||||||||    
T  55199451 tatattgacggtcatgaaacgtggcatccacattgcac 55199414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 647307 - 647485
Alignment:
Q  67 cggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgtttccattttgtttgag 166  Q
    |||||||||||||||||||||||||| |||||  |||||||||||||   |||||||||||||| ||||||||||||   ||| | |||||| |||||||    
T  647307 cggtcccatctgttcacatcagcaaagtgaatgacatcgagtaaggctgctgcctccccctccataactgtcatattagcccgctgccatttcgtttgag 647406  T
Q  167 cctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatc 245  Q
    || | | ||||||||    | |||||||||| ||||| ||||||||||||| ||||||||| ||| |||||||| ||||    
T  647407 cccggaaaaattgcctagagaagtctctaacacaacacgcaaaagatgtaatatggttacgctcatggaacgcggcatc 647485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 647209 - 647305
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggc 113  Q
    ||||||||||||||||||||| |||||  || ||||||||||||| ||| ||||| |||||||||||||||||||| |||||  |||||||||||||    
T  647209 gagacgatagagcttgcactagagtagatgagtcagactcgaagataactcggtcacatctgttcacatcagcaaagtgaatgacatcgagtaaggc 647305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 46007440 - 46007204
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    ||||||||| || |||||||| |||||  ||||| |||||||||||| ||||  |||||||||||| |||  |||| ||||| ||||| |||||||| |     
T  46007440 gagacgatatagtttgcactagagtagttgaatcggactcgaagaca-cccg--cccatctgttcatatcgacaaagtgaatggcatcaagtaaggctac 46007344  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctct-aacccaacatgcaaaagatgt 215  Q
    || ||||||||  |||| |||| |||||  ||| | |||||| ||||||||| |||||||||  || || |||||||| |||  |||| ||||||||| |    
T  46007343 tgtctccccctaaaaaattgtcgtatttgcccgctgccatttcgtttgagcccgaataaattttccacgagagtctctaaacaaaacacgcaaaagatat 46007244  T
Q  216 aagatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    |||||||||||  | | ||||| || ||||||||||||||    
T  46007243 aagatggttacaataatggaacacggcatccacattgcac 46007204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 27941129 - 27941250
Alignment:
Q  106 agtaaggcgattgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatg 205  Q
    |||||||| | ||||||||||||||||||| |||||||| |||| | |||||||||||||| | |||||||||| || || || |||||||  ||||| |    
T  27941129 agtaaggctactgcctccccctccaaaactatcatatttgtccgctgccattttgtttgagtccgaataaattgtcctcgagaatctctaatacaacacg 27941228  T
Q  206 caaaagatgtaagatggttacg 227  Q
    ||||| || ||| |||||||||    
T  27941229 caaaaaatataatatggttacg 27941250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 11020258 - 11020353
Alignment:
Q  49 tcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatattt 144  Q
    ||||||||||||||||||| || |||| ||||| |||||||||| | ||||||||||||||| ||   || |||||||||||||| ||||||||||    
T  11020258 tcagactcgaagacaacccagttccatttgttcccatcagcaaagtaaatagcatcgagtaaagctgatgtctccccctccaaaagtgtcatattt 11020353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 48227550 - 48227319
Alignment:
Q  22 gatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagca-tcgagtaaggcgattgcc 120  Q
    |||||||||||||||| |||||  || || ||||| |||||||| ||||   |||  |||||||||||||| |||   |   ||||||||||| | |||     
T  48227550 gatagagcttgcactagagtagatgagtcggactcaaagacaactcggttttatccattcacatcagcaaagtgatggggtctcgagtaaggctactgca 48227451  T
Q  121 tccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgtaagat 220  Q
    |||| |||||| || ||||| |||| ||  | |  ||| |||| |||| ||||||||||||| || ||||||||||| ||||| ||||||||||||| ||    
T  48227450 tcccactccaatacagtcatgttttcccactgctgtttcgtttaagcccgaataaattgcccgcgagagtctctaacacaacacgcaaaagatgtaacat 48227351  T
Q  221 ggttacggtcaaggaacgcgacatccacattg 252  Q
    ||||||||| | | || ||| |||||||||||    
T  48227350 ggttacggtaatgaaatgcggcatccacattg 48227319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 83 - 254
Target Start/End: Complemental strand, 2615568 - 2615397
Alignment:
Q  83 catcagcaaattgaatagcatcgagtaaggcgattgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgccc 182  Q
    |||||||||| ||||   ||||||||||||| | ||||||||||||||||||| ||||||||  ||| | ||| || ||||||||| |||| ||||||||    
T  2615568 catcagcaaagtgaacgacatcgagtaaggctactgcctccccctccaaaactatcatatttgcccgctgccaattcgtttgagcccgaatgaattgccc 2615469  T
Q  183 ccgggagtctctaacccaacatgcaaaagatgtaagatggttacggtcaaggaacgcgacatccacattgca 254  Q
     |   || ||||||| ||||   ||||| |||||| ||||||| | ||| | ||||||  ||||||||||||    
T  2615468 acaaaagcctctaacacaacgcacaaaaaatgtaatatggttatgatcatgaaacgcggtatccacattgca 2615397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 24176913 - 24176833
Alignment:
Q  15 cagagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattg 95  Q
    ||||||||||||||||||||||| |||||  |  |||||||||||||||||||  || |||||||||| |||| |||||||    
T  24176913 cagagacgatagagcttgcactagagtagttgtgtcagactcgaagacaacccaatctcatctgttcaaatcaacaaattg 24176833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 476
Target Start/End: Complemental strand, 33633765 - 33633710
Alignment:
Q  421 cttcaattatttttaaatgaaaaaatgtcaagattataacgggacctctgaattgt 476  Q
    |||||||| ||||||||||||||  ||||||||||||| | ||||||| |||||||    
T  33633765 cttcaattctttttaaatgaaaagttgtcaagattatatcaggacctccgaattgt 33633710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 27608949 - 27608999
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaaccc 67  Q
    |||||||||| |||||||||| |||||| || || ||||||||||||||||    
T  27608949 gagacgatagcgcttgcactagagtagctgagtcggactcgaagacaaccc 27608999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 34497418 - 34497468
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaaccc 67  Q
    |||||||||| |||||||||| |||||| || || ||||||||||||||||    
T  34497418 gagacgatagcgcttgcactagagtagctgagtcggactcgaagacaaccc 34497468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 444652 - 444700
Alignment:
Q  282 caacaattttgctgtcaatt-tgcattatccataggtaaatgcctattt 329  Q
    ||||| |||||||||||||| | |||| |||||||||||||||||||||    
T  444652 caacagttttgctgtcaattatacattgtccataggtaaatgcctattt 444700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 327 - 89
Alignment:
Q  17 gagacgatagagcttgcactaaagtagcagaatcagactcgaagacaacccggtcccatctgttcacatcagcaaattgaatagcatcgagtaaggcgat 116  Q
    |||| ||||| |||||||||| |||||| || || |||||||||||||||||||||||| | ||| || ||||||| ||||| |||||||||||||| |     
T  327 gagatgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggcatcgagtaaggcaac 228  T
Q  117 tgcctccccctccaaaactgtcatatttttccgtttccattttgtttgagcctgaataaattgcccccgggagtctctaacccaacatgcaaaagatgta 216  Q
    ||||||||||||| ||||||||||||||   ||||  ||||| ||||||||| |||| |||||||| |||||||||||||  ||||| || ||||||       
T  227 tgcctccccctcccaaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaaaacaacacgcgaaagatngt 128  T
Q  217 agatggttacggtcaaggaacgcgacatccacattgcac 255  Q
    | ||| | ||||||| | ||| |||||||||||||||||    
T  127 atatgttgacggtcatgaaacacgacatccacattgcac 89  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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