View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12756_low_13 (Length: 221)
Name: NF12756_low_13
Description: NF12756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12756_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 22921968 - 22922161
Alignment:
| Q |
11 |
agcagagaaaccaacatacatagtatcaagaaaaagaggtgatagatccatatgaaaagtcaaaataggttttttaggcttattagaagttggtgaaagt |
110 |
Q |
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| T |
22921968 |
agcagagaaaccaacatacatagtatcaagaaaaagaggtgatagatccatatgaaaagtcaaaataggttttttaggcttattagaagttggtgaaagt |
22922067 |
T |
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| Q |
111 |
gtaacactaataagttccaatgaagaatcataatcaacccaaactaaaattgtttttccacctttaatactaatattatgaaccatatcatcat |
204 |
Q |
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| T |
22922068 |
gtaacactaataagttccaatgaagaatcataatcaacccaaactaaaattggttttccacctttaatactaatattatgaaccatatcatcat |
22922161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 22933623 - 22933455
Alignment:
| Q |
11 |
agcagagaaaccaacatacatagtatcaagaaaaagaggtgatagatccatatgaaaagtcaaaataggttttttaggcttattagaagttggtgaaagt |
110 |
Q |
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|||||||||||||||||||||||||||| |||||| ||| |||||||||| |||||| | ||| || |||||||| || ||| | |||||||| |||||| |
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| T |
22933623 |
agcagagaaaccaacatacatagtatcatgaaaaataggagatagatccacatgaaaggacaagatcggttttttcggtttaattgaagttggagaaagt |
22933524 |
T |
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| Q |
111 |
gtaacactaataagttccaatgaagaatcataatcaacccaaactaaaattgtttttccacctttaata |
179 |
Q |
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| T |
22933523 |
gtaacactaataagattcaatgaagaatcataatcaacccaaacaagaattggtttcccacttttaata |
22933455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 15628047 - 15628206
Alignment:
| Q |
12 |
gcagagaaaccaacatacatagtatcaagaaaaagaggtgatagatccatatgaaaagtcaaaataggttttttaggcttattagaagttggtgaaagtg |
111 |
Q |
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|||||||| |||||||||||||||||| |||||| ||| |||||||| ||||||| | |||| | |||||||| || || | |||||||| ||||||| |
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| T |
15628047 |
gcagagaatccaacatacatagtatcatgaaaaataggcgatagatcggtatgaaaggacaaagttggtttttttggttttgttgaagttggagaaagtg |
15628146 |
T |
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| Q |
112 |
taacactaataagttccaatgaagaatcataatcaacccaaactaaaattgtttttccac |
171 |
Q |
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||||||||| ||| | | |||||||||||||||||||||| ||| ||||| ||| |||| |
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| T |
15628147 |
taacactaacaagatttattgaagaatcataatcaacccaagctagaattggtttcccac |
15628206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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