View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12756_low_4 (Length: 378)
Name: NF12756_low_4
Description: NF12756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12756_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 14130665 - 14130807
Alignment:
| Q |
1 |
aaaaaataaaaggaggtgcaagtgcaattatagcaaagataaaaagagcaatatgaagaatgtacgtagaagatctgaagatggaaaagccaaccaaacc |
100 |
Q |
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| T |
14130665 |
aaaaaataaaaggaggtgcaagtgcaattatagcaaagataaaaagagcaatatgaagaatgta----gaagatctgaagatggaaaagccaaccaaacc |
14130760 |
T |
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| Q |
101 |
ctagtgcaattaaatatttatccccataacattacagatgataccgt |
147 |
Q |
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| T |
14130761 |
ctagtgcaattaaatatttatccccataacattacagatgataccgt |
14130807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 220 - 363
Target Start/End: Original strand, 14130823 - 14130971
Alignment:
| Q |
220 |
aatctcatcaccacctccatattttaagatgaattttaattatcatagttagctccttaatcctttaatcttagctct----gccccttccctctctgca |
315 |
Q |
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| T |
14130823 |
aatctcatcaccacctccatattttaaaatgaattttaattatcatagttagctccttaatcctttaatcttagctctgctggccccttccctctctgca |
14130922 |
T |
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| Q |
316 |
tatcccttcctggatatatcgacc-gcgcagcttgtctcgtggtggatg |
363 |
Q |
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| T |
14130923 |
tatcccttcctggatatatcgaccggcgcagctcgtctcgtggtggatg |
14130971 |
T |
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