View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12757_high_10 (Length: 338)

Name: NF12757_high_10
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12757_high_10
NF12757_high_10
[»] chr4 (4 HSPs)
chr4 (10-322)||(6424147-6424459)
chr4 (224-304)||(47665820-47665900)
chr4 (236-274)||(33950165-33950203)
chr4 (224-264)||(41584558-41584598)
[»] chr7 (3 HSPs)
chr7 (236-306)||(22386026-22386096)
chr7 (219-265)||(44287860-44287906)
chr7 (230-291)||(27012147-27012208)
[»] chr3 (4 HSPs)
chr3 (178-240)||(52067067-52067129)
chr3 (230-306)||(38612888-38612963)
chr3 (230-289)||(13725331-13725390)
chr3 (163-203)||(14187647-14187687)
[»] chr2 (1 HSPs)
chr2 (189-270)||(42043193-42043274)
[»] chr8 (2 HSPs)
chr8 (219-265)||(20154076-20154122)
chr8 (219-265)||(20203348-20203394)
[»] chr5 (2 HSPs)
chr5 (265-306)||(16199223-16199264)
chr5 (262-306)||(12478335-12478379)
[»] chr6 (1 HSPs)
chr6 (163-291)||(31523683-31523810)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 322
Target Start/End: Complemental strand, 6424459 - 6424147
Alignment:
Q  10 agactatgttttccgaggagaatccatttgtagcagccttcaattcttccaaactgtactcactaaaactaggccacaagnnnnnnncattcttgccacc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||||    
T  6424459 agactatgttttccgaggagaatccatttgtagcagccttcaattcttccaaactgtactcactaaaactaggccacaagtttttttcatttttgccacc 6424360  T
Q  110 attttctacaatagtaaagataacatttttaaaccacaaaacggcgtgtcatgctatgatgcaccgacacagacactagacacaacactgccacatcgat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424359 attttctacaatagtaaagataacatttttaaaccacaaaacggcatgtcatgctatgatgcaccgacacagacactagacacaacactgccacatcgat 6424260  T
Q  210 accaataataacttaaaaagatgaattaatttaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatcagaattgtcggtgctacagtg 309  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6424259 accaataataacttaaaaagatgaattaattcaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatcagaattgtcggtgctacagcg 6424160  T
Q  310 gtgtcatgtgtct 322  Q
    |||||||||||||    
T  6424159 gtgtcatgtgtct 6424147  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 304
Target Start/End: Complemental strand, 47665900 - 47665820
Alignment:
Q  224 aaaaagatgaattaatttaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatcagaattgtcggtgcta 304  Q
    ||||| || |||||||| |||| ||||||||||||||||||  ||||||  |||||||||| | ||||| |||| ||||||    
T  47665900 aaaaaaattaattaattaaatgtaatcacatgtgtcggtgttggacaccggacatgccttccaccagaagtgtcagtgcta 47665820  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 33950165 - 33950203
Alignment:
Q  236 taatttaatgcaatcacatgtgtcggtgtcagacaccaa 274  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  33950165 taatttaatgtaatcatatgtgtcggtgtcagacaccaa 33950203  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 41584558 - 41584598
Alignment:
Q  224 aaaaagatgaattaatttaatgcaatcacatgtgtcggtgt 264  Q
    ||||| |||| ||||||||||| ||||||||||||||||||    
T  41584558 aaaaatatgatttaatttaatgtaatcacatgtgtcggtgt 41584598  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 22386026 - 22386096
Alignment:
Q  236 taatttaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatcagaattgtcggtgctaca 306  Q
    ||||||||||  |||| | ||||||||||||||||||| |||| ||||| ||||||| ||||||| |||||    
T  22386026 taatttaatgttatcatacgtgtcggtgtcagacaccagacataccttcaatcagaaatgtcggtactaca 22386096  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 44287860 - 44287906
Alignment:
Q  219 aacttaaaaagatgaattaatttaatgcaatcacatgtgtcggtgtc 265  Q
    ||||| |||| ||||||||||| |||||||||||||||||| |||||    
T  44287860 aacttgaaaaaatgaattaattaaatgcaatcacatgtgtcagtgtc 44287906  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 27012147 - 27012208
Alignment:
Q  230 atgaattaatttaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatcaga 291  Q
    ||||||||||| |||| | |||||||||||  |||| ||||||| | |||||||||||||||    
T  27012147 atgaattaattaaatgtattcacatgtgtctatgtcggacaccagatatgccttcgatcaga 27012208  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 52067067 - 52067129
Alignment:
Q  178 acagacactagacacaacactgccacatcgataccaataataacttaaaaagatgaattaatt 240  Q
    ||||||||  |||||||||||| ||| |||||||||||||||| |||| || |||||||||||    
T  52067067 acagacaccggacacaacactgacacgtcgataccaataataatttaagaaaatgaattaatt 52067129  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 38612963 - 38612888
Alignment:
Q  230 atgaattaatttaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatcagaattgtcggtgctaca 306  Q
    ||||||||| | |||| | || ||||||||| |||| ||||||||||||||||| |||||||| ||||| |||||||    
T  38612963 atgaattaactgaatgtactcgcatgtgtcg-tgtcggacaccaaacatgccttagatcagaaatgtcgatgctaca 38612888  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 13725331 - 13725390
Alignment:
Q  230 atgaattaatttaatgcaatcacatgtgtcggtgtcagacaccaaacatgccttcgatca 289  Q
    ||||||||||| |||| ||||||||||||| ||| ||||||||  |||||||||| ||||    
T  13725331 atgaattaattgaatgaaatcacatgtgtctgtgccagacaccggacatgccttcaatca 13725390  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 14187687 - 14187647
Alignment:
Q  163 ctatgatgcaccgacacagacactagacacaacactgccac 203  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  14187687 ctatgaagcactgacacagacaccagacacaacactgccac 14187647  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 42043274 - 42043193
Alignment:
Q  189 acacaacactgccacatcgataccaataataacttaaaaagatgaattaatttaatgcaatcacatgtgtcggtgtcagaca 270  Q
    ||||||||| | |||||| | ||| ||||||| |||| || ||||||||||| |||| ||| ||||| ||||||||||||||    
T  42043274 acacaacacggacacatcaacaccgataataatttaataaaatgaattaattgaatgtaataacatgcgtcggtgtcagaca 42043193  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 20154122 - 20154076
Alignment:
Q  219 aacttaaaaagatgaattaatttaatgcaatcacatgtgtcggtgtc 265  Q
    ||||| |||| ||||||||||| |||||||||||||||||| |||||    
T  20154122 aacttgaaaaaatgaattaattaaatgcaatcacatgtgtcagtgtc 20154076  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 20203348 - 20203394
Alignment:
Q  219 aacttaaaaagatgaattaatttaatgcaatcacatgtgtcggtgtc 265  Q
    ||||| |||| ||||||||||| |||||||||||||||||| |||||    
T  20203348 aacttgaaaaaatgaattaattaaatgcaatcacatgtgtcagtgtc 20203394  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 16199264 - 16199223
Alignment:
Q  265 cagacaccaaacatgccttcgatcagaattgtcggtgctaca 306  Q
    ||||||||||||| ||||| |||||||| |||||||||||||    
T  16199264 cagacaccaaacaagcctttgatcagaaatgtcggtgctaca 16199223  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 12478335 - 12478379
Alignment:
Q  262 tgtcagacaccaaacatgccttcgatcagaattgtcggtgctaca 306  Q
    |||||||||||| ||| |||||| ||||||| |||||||||||||    
T  12478335 tgtcagacaccagacacgccttccatcagaaatgtcggtgctaca 12478379  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 291
Target Start/End: Complemental strand, 31523810 - 31523683
Alignment:
Q  163 ctatgatgcaccgacacagacactagacacaacactgccacatcgataccaataataacttaaaaagatgaattaatttaatgcaatcacatgtgtcggt 262  Q
    |||||| ||||  ||||||||||  ||||| |||||| |||||  | ||  |||| || || |||| || |||||||| |||| |||||| ||||||| |    
T  31523810 ctatgaagcacaaacacagacaccggacacgacactggcacataaacactgataaaaaatttaaaaaattaattaattgaatgtaatcacttgtgtcg-t 31523712  T
Q  263 gtcagacaccaaacatgccttcgatcaga 291  Q
    ||| ||||||||||| |||||| ||||||    
T  31523711 gtcggacaccaaacacgccttccatcaga 31523683  T

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