View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12757_high_13 (Length: 316)
Name: NF12757_high_13
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 41753618 - 41753317
Alignment:
| Q |
1 |
acttataaagtatatgttcattatgttattatataatgataatacaaacaatatcaaatctgctataacacttttctttccttctgaagagacaaacata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41753618 |
acttataaagtatatgttcattatgttattatataat-ataatacaaacaatatcaaatctgctataacacttttctttccttctgaagagacatacata |
41753520 |
T |
|
| Q |
101 |
tgattagaaacagttaatgtgacatttccagattacatgaaaaatgttaacaaaatcttacttcttcttgtcaatacttgggatatcacttctttctgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41753519 |
tgattagaaacagttaatgtgacatttccagattacatgaaaaatgttaacaaaatcttacttcttcttgtcaatacttgggatatcacttctttctgcc |
41753420 |
T |
|
| Q |
201 |
ttctccacaatcaccttcaggaagatcaagatacagtttagcataataacaatagtataccatctatcaggaatgtacattttcaagtatcatgagtgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41753419 |
ttctccacaatcaccttcaggaagatcaagatacagtttagcataataacaatagtataccatctatcaggaatgtacattttcaagtatcatgagtgca |
41753320 |
T |
|
| Q |
301 |
gtg |
303 |
Q |
| |
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||| |
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| T |
41753319 |
gtg |
41753317 |
T |
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