View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12757_high_15 (Length: 310)
Name: NF12757_high_15
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 294
Target Start/End: Original strand, 112066 - 112345
Alignment:
| Q |
12 |
aaaggttgagtgattatgtccatagctaccaatcagattcctctgccgcgtctccatatgtgttttcttcttttctttagcaaacatctcattagtaaac |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
112066 |
aaaggttgagtgattatgtccatagctaccaatcagattcctccgcc-cgtctccatatgtgttttcttcttttctttagcaaacatctcattagtg--c |
112162 |
T |
|
| Q |
112 |
tttcatgaaggtgcattcaagttcaaccttgtataccttttttctttagtatgcaaaacttgtccacaagtccctgcataatggctaagatgttaaataa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
112163 |
tttcatgaaggtgcattcaagttcaaccttgtataccttttttctttagtatgcaaaacttgtccacaagtccctgcataatggctaagatgttaaataa |
112262 |
T |
|
| Q |
212 |
catttctatctaattgaatattgtcgatcagaaagttagagaagtcattttggtacaaggaaacaacaatatggggataaaat |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
112263 |
catttctatctaattgaatattgtcgatcagaaagttagagaagtccttttggtacaaggaaacaacaatatggggataaaat |
112345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 236233 - 236187
Alignment:
| Q |
70 |
tgtgttttcttcttttctttagcaaacatctcattagtaaactttca |
116 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
236233 |
tgtgttttcttctcttcttcagcaaacatctcattagcaaactttca |
236187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 749856 - 749810
Alignment:
| Q |
70 |
tgtgttttcttcttttctttagcaaacatctcattagtaaactttca |
116 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
749856 |
tgtgttttcttctcttcttcagcaaacatctcattagcaaactttca |
749810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 802143 - 802189
Alignment:
| Q |
70 |
tgtgttttcttcttttctttagcaaacatctcattagtaaactttca |
116 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
802143 |
tgtgttttcttctcttcttcagcaaacatctcattagcaaactttca |
802189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 806091 - 806045
Alignment:
| Q |
70 |
tgtgttttcttcttttctttagcaaacatctcattagtaaactttca |
116 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
806091 |
tgtgttttcttctcttcttcagcaaacatctcattagcaaactttca |
806045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University