View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12757_high_17 (Length: 251)
Name: NF12757_high_17
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 36282961 - 36283183
Alignment:
| Q |
18 |
ccatttcacctctaattttatttacatttcccatatcccacattaaaacccttgcatggccaaaataaaactagaactagaagaacaagttgataggatc |
117 |
Q |
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| T |
36282961 |
ccatttcacctctaattttatttacatttcccatatcccacattaaaacccttgcatggccaaaagaaaactagaactagaagaacaagttgataggatc |
36283060 |
T |
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| Q |
118 |
agtagtttgcacaatgaagtacttgctaatatcctttcattcctaccaacaaaagaagctattgctactagtgttttgtcacgtaggtgggtttctcttt |
217 |
Q |
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| T |
36283061 |
agtagtttacacaatgaagtacttgctaatatcctttcattcctaccaacaaaagaagctattgctactagtgttttgtcacgtaggtgggtttctcttt |
36283160 |
T |
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| Q |
218 |
ggacacttaccaattctcttcat |
240 |
Q |
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|||||||||| |||||||||||| |
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| T |
36283161 |
ggacacttactaattctcttcat |
36283183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 34553770 - 34553888
Alignment:
| Q |
103 |
caagttgataggatcagtagtttgcacaatgaagtacttgctaatatcctttcattcctaccaacaaaagaagctattgctactagtgttttgtcacgta |
202 |
Q |
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|||||||||||||||||||| || | ||||| ||| ||||| |||||||||||||||||||||| ||||| ||||| | || |||||||| || | || |
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| T |
34553770 |
caagttgataggatcagtagattaccaaatgaggtaattgcttatatcctttcattcctaccaaccaaagatgctatcacaacaagtgttttatcccata |
34553869 |
T |
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| Q |
203 |
ggtgggtttctctttggac |
221 |
Q |
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||||| |||| |||||||| |
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| T |
34553870 |
ggtggatttcactttggac |
34553888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 29914662 - 29914750
Alignment:
| Q |
130 |
aatgaagtacttgctaatatcctttcattcctaccaacaaaagaagctattgctactagtgttttgtcacgtaggtgggtttctctttg |
218 |
Q |
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||||||||||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
29914662 |
aatgaagtacttgctaaaattctttcattcctagcaacaaaagaagctattgaaactagtgttttgtcacgtaggtgtgtttctctttg |
29914750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 29963815 - 29963903
Alignment:
| Q |
130 |
aatgaagtacttgctaatatcctttcattcctaccaacaaaagaagctattgctactagtgttttgtcacgtaggtgggtttctctttg |
218 |
Q |
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||||||||||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
29963815 |
aatgaagtacttgctaaaattctttcattcctagcaacaaaagaagctattgaaactagtgttttgtcacgtaggtgtgtttctctttg |
29963903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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