View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12757_high_20 (Length: 242)
Name: NF12757_high_20
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 7175672 - 7175434
Alignment:
| Q |
2 |
ggtttatgttgcttctatgtattttagattttctgtagtatgaacgaatgagtgacaaaatgtattcccacattactagactacaagtacttgttgcttt |
101 |
Q |
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| T |
7175672 |
ggtttatgttgcttctatgtattttagattttctgtagtttgaacgaatgagtgacaaaatgtattcccacattactagactacaagtacttgttgcttt |
7175573 |
T |
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| Q |
102 |
cgaaagatataagcatgctatttattctaaattcgatttttactgcagtttaaaaatataggtttaattatacttttcttcatttatctttaatccaaaa |
201 |
Q |
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| T |
7175572 |
cggaagatataagcatgctatttattctaaattcgatttttactgcagtttaaaaatataggtttaattatacttttcttcatttatctttaatccaaaa |
7175473 |
T |
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| Q |
202 |
tttgttttaatctgttatctattttttattattcctttg |
240 |
Q |
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|||||| |||||| ||||||||||||||||||||||||| |
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| T |
7175472 |
tttgttctaatctcttatctattttttattattcctttg |
7175434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 7187193 - 7187034
Alignment:
| Q |
21 |
tattttagattttctgtagtatgaa-cgaatgagtga--caaaatgtattcccacattactagactacaagtacttgttgctttcgaaagatataagcat |
117 |
Q |
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| T |
7187193 |
tattttagattttcaatagtatgaaacgaatgagtggggctgaatttattcccacataactagacaacaagtacttgttgttttcgaaagatataagcat |
7187094 |
T |
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| Q |
118 |
gctattt--attctaaattcgatttttactgcagtttaaaaatataggtttaattatactt |
176 |
Q |
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| T |
7187093 |
gatatctccattctaaa-tcgaatattcctgcactttaaactaataggtttaattatactt |
7187034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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