View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12757_high_5 (Length: 412)
Name: NF12757_high_5
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 151 - 396
Target Start/End: Original strand, 46279392 - 46279637
Alignment:
| Q |
151 |
gcatggctattttgaacttacttgttgaaggttattgagagaattgaacatcataggtggactccatttgctcataatgaacaaagaattatcttcatct |
250 |
Q |
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| T |
46279392 |
gcatggctaatttgaacttacttgttgaaggttattgagagaattgaacatcataggtggactccatttgctcataatgaacaaagaattatcttcatct |
46279491 |
T |
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| Q |
251 |
gaatgttgttcctttgctttttgagagcttgtttctacttcagcctcatcaatcagcttcacatgatcaaaggaaggatgattcacaccttgagtactct |
350 |
Q |
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| T |
46279492 |
gaatgttgttcctttgctttttgagagcttgtttctacttcagcctcatcaatcagcttcacatgatcaaaggaaggatgagtcacaccttgagtactct |
46279591 |
T |
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| Q |
351 |
gatgtgtacctgcagattcttccacactttcaaaggggttccaaat |
396 |
Q |
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| T |
46279592 |
gatgtgtacctgcagattcttccacactttcaaaggggttccaaat |
46279637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 46279259 - 46279336
Alignment:
| Q |
18 |
ggttgttgtatgcttcccaaggtttttccatggattggtgaaattgttcaaattgatgctgcaaacaatttcatgatt |
95 |
Q |
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| T |
46279259 |
ggttgttgtatgcttcccaaggtttttccatggattggtgaaattgttcaaattgatgctgcaaacaatttcatgatt |
46279336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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