View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12757_high_6 (Length: 406)
Name: NF12757_high_6
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 27723077 - 27723451
Alignment:
| Q |
16 |
ctgtgattggaatctaattttgtgtttgattacgcggtatcaatgctacaaatagtcctttgacaaattacggggaattttcatatcgatgatagaatga |
115 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27723077 |
ctgtaattgaaatctaattttgtctttgattacgcggtatcaacgctacaaatagtcctttgacaaattacggggaattttcatatcgatgatagaatga |
27723176 |
T |
|
| Q |
116 |
catgcagaagacacgttcaaacaagcaccaagtcaaccagcaattgtaaattaactgtactagaatctgaggttctcactcctgtttccatgtgaaaaag |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27723177 |
catgcagaagacacgtccaaacaagcaccaagtcaaccagcaattgtaaattaactgtactagaatctgaggttctcactcctgtttctatgtgaaaaag |
27723276 |
T |
|
| Q |
216 |
ctgtagtaaaattatagccattttaccccctctaaatagtgtgaatcagcaaccaatctgaattatttaaacaaaatgatggaaaattacataacatcct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27723277 |
ctgtagtaaaattatagccattttaccccctctaaatagtgtgaatcagcaaccaatctgaattatttaaacaaaatgatggaaaattacataacatcct |
27723376 |
T |
|
| Q |
316 |
cataatcaaaactctgaaatgaagttttaagaaccagtgcgggaaagaatatacaccataactaaaataaataac |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27723377 |
cataatcaaaactctgaaatgaagttttaagaaccagtgcgggaaagaatatacaccataactaaaataaataac |
27723451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University