View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12757_high_7 (Length: 404)
Name: NF12757_high_7
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_high_7 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 34291047 - 34291432
Alignment:
| Q |
19 |
acaagatcgttgcaatttgacaaatccaataatcttagactgcccagatttcctatttcaaatgggagctctttaatattagaatctgcaaaacttagga |
118 |
Q |
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| T |
34291047 |
acaagatcgttgcaatttgacaaatccaataatcttagactgcccagatttcctatttcaaatgggagctctttaatattagaatctgcaaaacttagga |
34291146 |
T |
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| Q |
119 |
cttctaggtgtttaagttccttaccaattatagatatatctccaacatcacaatgttccacttgcaacgtgtggagattgagtgaagcttgggataaata |
218 |
Q |
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| T |
34291147 |
cttctaggtgtttaagttccttaccaattatagatatatctccaacatcacaatgttccacttgcaacgtgtggagattgagtgaagcttgggataaata |
34291246 |
T |
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| Q |
219 |
tggcagttttggaatgcacaaattttgtaaggataaaactttaagtgcactcatgccttggaagaaaagttcaggccaagacaatggtttcttgcctttt |
318 |
Q |
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| T |
34291247 |
tggcagttttggaatgcacaaattttgtaaggataaaactttaagtgcactcatgccttggaagaaaagttcaggccaagacaatggtttcttgcctttt |
34291346 |
T |
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| Q |
319 |
gtacttacttgtaaaagtttaagcgtcggacagtgtaagccattttctaacacttttgtatcatccaaaataagtgatattgcgtt |
404 |
Q |
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| T |
34291347 |
gtacttacttgtaaaagtttaagcgtcggacagtgtaagccattttctaacacttttgtatcatccaaaataagtgatattgcgtt |
34291432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 401
Target Start/End: Original strand, 34565536 - 34565917
Alignment:
| Q |
20 |
caagatcgttgcaatttgacaaatccaataatcttagactgcccagatttcctatttcaaatgggagctctttaatattagaatctgcaaaacttaggac |
119 |
Q |
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| T |
34565536 |
caagatcattgcaatttgacaaatctaataatcttacactgcccagatttcctatttcaattgggagttctttaatattagaatgtgcaaaacttaggac |
34565635 |
T |
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| Q |
120 |
ttctaggtgtttaagttccttaccaattatagatatatctccaacatcacaatgttccacttgcaacgtgtggagattgagtgaagcttgggataaatat |
219 |
Q |
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| T |
34565636 |
ttctaggtgtttaagttccttaccgattatagatatatctccaacatcacagtgttctacttgcaatgtgtggagattgactgaagcttgggataaatat |
34565735 |
T |
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| Q |
220 |
ggcagttttggaatgcacaaattttgtaaggataaaactttaagtgcactcatgccttggaagaaaagttcaggccaagacaatggtttcttgccttttg |
319 |
Q |
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| T |
34565736 |
ggcagttttggaatgcataaatttttcatggataaaactttaagtgtgctcatgctttggaagaaaagttcaggccaaaacattggttccttgctttttg |
34565835 |
T |
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| Q |
320 |
tacttacttgtaaaagtttaagcgtcggacagtgtaagccattttctaacacttttgtatcatccaaaataagtgatattgc |
401 |
Q |
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| T |
34565836 |
aacttacttgtaaaattttaagtgtcggacagtgtaagccattttctaactctttagtatcatccaaaataagtgatattgc |
34565917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 34553866 - 34554142
Alignment:
| Q |
21 |
aagatcgttgcaatttgacaaatccaataatcttagactgcccagatttcctatttcaaatgggagctctttaatattagaatctgcaaaacttaggact |
120 |
Q |
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|||||| |||||||||| ||||||||||||||||||| ||| || ||||||||||||| ||| || |||||||| ||||| | ||||||||||| |||| |
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| T |
34553866 |
aagatcattgcaatttgtcaaatccaataatcttagaatgctcaagtttcctatttcaactggaagttctttaattttagagtgtgcaaaacttaagact |
34553965 |
T |
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| Q |
121 |
tctaggtgtttaagttccttaccaattatagatatatctccaacatcacaatgttccacttgcaacgtgtggagattgagtgaagcttgggataaatatg |
220 |
Q |
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| T |
34553966 |
tctaggtgtataagttccttaccaattatagatatatctccaacatcacaatattctaatagcagcatatggaggctaactgagacttgagatagagatg |
34554065 |
T |
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| Q |
221 |
gcagttttggaatgcacaaattttgtaaggataaaactttaagtgcactcatgccttggaagaaaagttcaggccaa |
297 |
Q |
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| T |
34554066 |
gaagttttggaatgtacacattttgcatagacaaaactttgagtgatttcatgcattggaagaaatgttccggccaa |
34554142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 34372614 - 34372517
Alignment:
| Q |
73 |
atttcaaatgggagctctttaatattagaatctgcaaaacttaggacttctaggtgtttaagttccttaccaattatagatatatctccaacatcaca |
170 |
Q |
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||||||| ||| || |||| ||||||||||| ||||| || |||| |||||| | || | || |||||||||||||||||||||||||||||||| |
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| T |
34372614 |
atttcaagtggaagttcttcaatattagaattggcaaagctcaggatttctagtttatttaactctttaccaattatagatatatctccaacatcaca |
34372517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 22 - 401
Target Start/End: Original strand, 15895228 - 15895607
Alignment:
| Q |
22 |
agatcgttgcaatttgacaaatccaataatcttagactgcccagatttcctatttcaaatgggagctctttaatattagaatctgcaaaacttaggactt |
121 |
Q |
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||||| |||||| || |||||||||||||||||||||||||| || ||||||||||| |||||| ||||||| ||| |||| || ||||||||||||| |
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| T |
15895228 |
agatcattgcaacctgtcaaatccaataatcttagactgcccaaatctcctatttcaattgggagttctttaacattggaatgtgacaaacttaggactt |
15895327 |
T |
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| Q |
122 |
ctaggtgtttaagttccttaccaattatagatatatctccaacatcacaatgttccacttgcaacgtgtggagattgagtgaagcttgggataaatatgg |
221 |
Q |
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|||| || ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| || |||||||||| | | | |
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| T |
15895328 |
ctagaagtaaaagtttcttaccaattatagatatatctccaacatcacaatgttctactttcaatgtgtggagattgaatggggcttgggatagagacga |
15895427 |
T |
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| Q |
222 |
cagttttggaatgcacaaattttgtaaggataaaactttaagtgcactcatgccttggaagaaaagttcaggccaagacaatggtttcttgccttttgta |
321 |
Q |
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| T |
15895428 |
gagtttaggaatgcacaaattttgcatagataaaactttaagagcacacattccttggaagaaaagttcgggccaagagattggttccttgctttttgac |
15895527 |
T |
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| Q |
322 |
cttacttgtaaaagtttaagcgtcggacagtgtaagccattttctaacacttttgtatcatccaaaataagtgatattgc |
401 |
Q |
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| T |
15895528 |
cttacttgaaaaagtttaagtgtcggacactctaagccactttctaacttgtttgaatcatccaagataagtgatattgc |
15895607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 130930 - 130769
Alignment:
| Q |
21 |
aagatcgttgcaatttgacaaatccaataatcttagactgcccagatttcctatttcaaatgggagctctttaatattagaatctgcaaaacttaggact |
120 |
Q |
| |
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|||||| |||||||||| |||||| |||||||||||| ||| || ||||||||||||| ||| || |||||||||||||| | |||||||||||||||| |
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| T |
130930 |
aagatcattgcaatttgtcaaatctaataatcttagaatgctcaagtttcctatttcaattggaagttctttaatattagagtgtgcaaaacttaggact |
130831 |
T |
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| Q |
121 |
tctaggtgtttaagttccttaccaattatagatatatctccaacatcacaatgttccacttg |
182 |
Q |
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|||| |||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |
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| T |
130830 |
tctatgtgtgtaagttccttaccaattatagatatatcaccaacatcacaatattctacttg |
130769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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