View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12757_low_14 (Length: 312)
Name: NF12757_low_14
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 24567369 - 24567480
Alignment:
| Q |
152 |
aatgcaaacatctagattctatctttactggtatagtaatatatggtgaggtgagttaaccttaagaatatgcatataaatccctgtctccatccacatg |
251 |
Q |
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| T |
24567369 |
aatgcaaacatctagattctatctttactggtatagtaatatatggtgaggtgagttaaccttaagaatatgcatataaatccctctctccatccacatg |
24567468 |
T |
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| Q |
252 |
cactattgaatt |
263 |
Q |
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|||||||||||| |
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| T |
24567469 |
cactattgaatt |
24567480 |
T |
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Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 24567235 - 24567327
Alignment:
| Q |
18 |
agaaaagtttatataaaagttggcacaatctttctggtgatcctttaacttggtctaaaataaattatatatgtacacgattgattcttcatg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24567235 |
agaaaagtttatataaaagttggcacaatctttctggtgatcctttaacttggtctaaaataaattatatatgtacacgattgattcttcatg |
24567327 |
T |
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