View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12757_low_16 (Length: 251)
Name: NF12757_low_16
Description: NF12757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12757_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 14742889 - 14742649
Alignment:
| Q |
1 |
ataaacgtgagagttgagacaaagcaaagacagttgttgacgtttgaattggcttaattttggttattcgagtattttgaatagtggtttatagcaccga |
100 |
Q |
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| T |
14742889 |
ataaacgtgagagttgagacaaagcaaagacagttgttgaggtttgaattggcttaattttggttattcgagtattttgaatagtggtttatagcaccga |
14742790 |
T |
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| Q |
101 |
agtgtggctgagcggctatgcagcccatgccatgtaatgtactggttttgttgcaacttgacatgttcaagtcgaagatcaatagtagtttgttcttcta |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14742789 |
agtgtggctgagtggctatgcagcccatgccatgtaatgtactggttttgttgcaacttgacatgttcaagtcgaagatcaatagtagtttgttcttcta |
14742690 |
T |
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| Q |
201 |
aatcactcaccatcctttctatacaaaacagtagtcctatg |
241 |
Q |
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| T |
14742689 |
aatcactcaccatcctttctatacaaaacagtagacctatg |
14742649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 14745817 - 14745695
Alignment:
| Q |
15 |
tgagacaaagcaaagacagttgttgacgtttgaattggcttaattttggttattcgagtattttgaatagtggtttatagcaccgaagtgtggctgagcg |
114 |
Q |
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|||| |||| ||||||| |||||||| || | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14745817 |
tgagccaaatcaaagacggttgttgaggtgttaattggcttaattttggttattcgagtgttttgaatagtggtttatagcaccgaagtgtggctgagcg |
14745718 |
T |
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| Q |
115 |
gctatgcagcccatgccatgtaa |
137 |
Q |
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| T |
14745717 |
gctatgtagctcatgccatgtaa |
14745695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 14745442 - 14745351
Alignment:
| Q |
143 |
tggttttgttgcaacttgacatgttcaagtcgaagatcaatagtagtttgttcttctaaatcactcaccatcctttctatacaaaacagtag |
234 |
Q |
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| T |
14745442 |
tggttttgttgcaacttgaaatgttcaagtcgaagatcaatagtagtttgttcttctaaatcagtcgccatcctttctatacaaaacagtag |
14745351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 14282194 - 14282320
Alignment:
| Q |
100 |
aagtgtggctgagcggctatgcagcccatgccatgtaatgtactggttttgttgcaacttgacatgttcaagtcgaagatcaatagtagtttgttcttct |
199 |
Q |
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|||||||| |||| |||||||| || |||||||||||||||||||||| |||||||| ||| |||||||||| |||||||||| || ||||||||| | |
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| T |
14282194 |
aagtgtggttgagtggctatgcgaccaatgccatgtaatgtactggtttggttgcaacctgaaatgttcaagttcaagatcaataatattttgttctttt |
14282293 |
T |
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| Q |
200 |
aaatcactcaccatcctttctatacaa |
226 |
Q |
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| T |
14282294 |
ggatcactcaccatcctctctatacaa |
14282320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 22834373 - 22834298
Alignment:
| Q |
146 |
ttttgttgcaacttgacatgttcaagtcgaagatcaatagtagtttgttcttctaaatcactcaccatcctttcta |
221 |
Q |
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||||| |||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22834373 |
ttttgctgcaacttgaaatgttcaagttgaagatcaatagtagtttgttcttctggatcactcaccatcctttcta |
22834298 |
T |
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